API Reference¶

Basic package usage:

>>> import gemmapy
>>> api_instance = gemmapy.GemmaPy()
>>> api_response = api_instance.FUNCTION(args)

Where FUNCTION is one of the methods of the gemmapy.GemmaPy class described below. Return types (classes) are described in gemmapy.sdk.models (unless they are Pandas DataFrame or AnnData objects).

gemmapy Package¶

Main package containing GemmaPy class described below and gemmapy.sdk subpackage containing lower level swagger generated code. Of the latter only gemmapy.sdk.models module is documented here as its classes represent GemmaPy method return values.

gemmapy.GemmaPy Class¶

class gemmapy.GemmaPy(auth=None, path='prod')[source]¶

Main API class

Parameters:

auth (list) – (optional) A list or tuple of credential strings, e.g. (your_username, your_password)
devel (bool) – (optional) If True development version of Gemma API will be used. Default is False.

Methods

`get_dataset_object`(datasets[, genes, ...])	Return a data structure including all relevant data related to gene expression in a dataset.
`get_dataset_annotations`(dataset, **kwargs)	Retrieve the annotations of a dataset
`get_differential_expression_values`([...])	Retrieves the differential expression resultSet(s) associated with the dataset.
`get_dataset_differential_expression_analyses`(...)	Retrieve annotations and surface level stats for a dataset's differential analyses
`get_dataset_expression`(dataset, **kwargs)	Deprecated in favour of get_dataset_expression
`get_dataset_platforms`(dataset, **kwargs)	type dataset: `str` \| `int`
`get_result_sets`([datasets, result_sets, ...])	Returns queried result set
`get_dataset_samples`(dataset, **kwargs)	Retrieve the samples of a dataset
`get_datasets_by_ids`(dataset[, filter, taxa, ...])	type dataset: `List`[`Union`[`str`, `int`]]
`get_gene_go_terms`(gene, **kwargs)	type gene: `str` \| `int`
`get_gene_locations`(gene, **kwargs)	type gene: `str` \| `int`
`get_gene_probes`(gene[, offset, limit])	Retrieve the probes associated to a genes across all platforms
`get_genes`(genes, **kwargs)	Retrieve genes matching gene identifiers
`get_platform_annotations`(platform, **kwargs)	Gets Gemma's platform annotations including mappings of microarray probes to genes.
`get_platform_datasets`(platform[, offset, limit])	Retrieve all experiments using a given platform
`get_platform_element_genes`(platform, probe)	Retrieve the genes associated to a probe in a given platform
`get_platforms_by_ids`(platforms[, filter, ...])	Retrieve platforms by their identifiers
`search_annotations`(query, **kwargs)	Search for annotation tags
`get_taxa`(**kwargs)	Get all taxa within Gemma

filter_properties(output_type='DataFrame')[source]¶

Some functions such as get_datasets and get_platforms include a filter argument that allows creation of more complex queries. This function returns a list of supported properties to be used in those filters

Parameters:: output_type (str, optional) – Type to return. “DataFrame” or “dict”, defaults to ‘DataFrame’
Returns:: DataFrame or dict containing supported properties and their data types
Return type:: dict|DataFrame

get_all_pages(fun, step_size=100, **kwargs)[source]¶

A convenience function to allow easy iteration over paginated outputs. If the function returns a DataFrame output will be merged by the rows, if the function returns a list (eg. ‘raw’ functions) a concatanated list will be returned

Parameters:

fun (Callable) – A callable from gemmapy with offset and limit functions
step_size (int, optional) – Size of individual calls to the server. 100 is the maximum value and the default.
**kwargs –
arguments for the callable fun

Returns:

A DataFrame or a list containing all the output depending on output of the callable

Return type:

list|DataFrame

get_child_terms(terms)[source]¶

When querying for ontology terms, Gemma propagates these terms to include any datasets with their child terms in the results. This function returns these children for any number of terms, including all children and the terms itself in the output vector

Parameters:: terms (List[str]) – A list of ontology terms
Returns:: An array containing descendends of the annotation terms,

including the terms themselves :rtype: List[str]

get_dataset_annotations(dataset, **kwargs)[source]¶

Retrieve the annotations of a dataset

Parameters:

dataset (str|int) – A numerical dataset identifier or a dataset short name
**kwargs –
Additional arguments to pass to raw.get_dataset_annotations

Returns:

A DataFrame with information about the annotations of the queried dataset. The fields of the DataFrame are:

class_name: Name of the annotation class (e.g. organism part)

class_URI: URI for the annotation class

term_name: Name of the annotation term (e.g. lung)

term_URI: URI for the annotation term

object_class: Class of object that the term originated from.

Return type:

DataFrame

get_dataset_differential_expression_analyses(dataset, **kwargs)[source]¶

Retrieve annotations and surface level stats for a dataset’s differential analyses

Parameters:

dataset (str|int) – A numerical dataset identifier or a dataset short name
**kwargs –
Additional arguments to pass to raw.get_dataset_differential_expression_analyses

Returns:

A data table with information about the differential expression analysis of the queried dataset. Note that this funciton does not return differential expression values themselves. Use get_differential_expression_values to get differential expression values (see examples).

The fields of the DataFrame are:

result_ID: Result set ID of the differential expression analysis. May represent multiple factors in a single model.
contrast_ID: Id of the specific contrast factor. Together with the result.ID they uniquely represent a given contrast.
experiment_ID: Id of the source experiment
factor_category: Category for the contrast
factor_category_URI: URI for the contrast category
factor_ID: ID of the factor
baseline_factors: Characteristics of the baseline. This field is a DataFrame
experimental_factors: Characteristics of the experimental group. This field is a DataFrame
isSubset: True if the result set belong to a subset, False if not. Subsets are created when performing differential expression to avoid unhelpful comparisons.
subset_factor: Characteristics of the subset. This field is a DataFrame
probes_analyzed: Number of probesets represented in the contrast
genes_analyzed: Number of genes represented in the contrast

Return type:

DataFrame

get_dataset_expression(dataset, **kwargs)[source]¶

Deprecated in favour of get_dataset_expression

Return type:: DataFrame

get_dataset_expression_for_genes(datasets, genes, keep_non_specific=False, consolidate=None, **kwargs)[source]¶

Retrieve the expression data matrix of a set of datasets and genes

Parameters:

datasets (List[str|int]) – A numerical dataset identifier or a dataset short name
genes (List[int]) – An ensembl gene identifier which typically starts with ensg or an ncbi gene identifier or an official gene symbol approved by hgnc
keep_non_specific (bool, optional) – If True, results from probesets that are not specific to the gene will also be returned., defaults to False
consolidate (TYPE, optional) – An option for gene expression level consolidation. If empty, will return every probe for the genes. “pickmax” to pick the probe with the highest expression, “pickvar” to pick the prove with the highest variance and “average” for returning the average expression, defaults to None
**kwargs –
Additional arguments to pass to raw.get_dataset_expression_for_genes

Returns:

A dict of DataFrames keyed to dataset ids

Return type:

dict[int:DataFrame]

get_dataset_object(datasets, genes=None, keep_non_specific=False, consolidate=None, result_sets=None, contrasts=None, meta_type='text', output_type='anndata', **kwargs)[source]¶

Return a data structure including all relevant data related to gene expression in a dataset. Either returns an anndata object or a dictionary with all the needed fields.

Parameters:

datasets (List[str|int]) – Numerical dataset identifier dataset short names
genes (Optional[List[str|int]], optional) – An ncbi gene identifier an, ensembl gene identifier which typically starts with ensg or an official gene symbol approved by hgnc, defaults to None
keep_non_specific (TYPE, optional) – If True, results from probesets that are not specific to the gene will also be returned, defaults to False
consolidate (Optional[str], optional) – DESCRIPTION, An option for gene expression level consolidation. If empty, will return every probe for the genes. “pickmax” to pick the probe with the highest expression, “pickvar” to pick the prove with the highest variance and “average” for returning the average expression to None
result_sets (Optional[List[int]], optional) – Result set IDs of the a differential expression analysis. If provided, the output will only include the samples from the subset used in the result set ID. Must be the same length as datasets, defaults to None
contrasts (Optional[List[str]], optional) – Contrast IDs of a differential expression contrast. Need result_sets to be defined to work. If provided, the output will only include samples relevant to the ‘ specific contrats. Must be the same length as datasets.
meta_type (str, optional) – How should the metadata information should be included. Can be “text”, “uri” or “both”. “text” and “uri” options, defaults to None
meta_type – How should the metadata information should be included. Can be “text”, “uri” or “both”. “text” and “uri” options, defaults to ‘text’
output_type (str, optional) – Type of the returned object. “anndata” for an AnnData object and “dict” for a dictionary populated with DataFrames, defaults to ‘anndata’
**kwargs –
DESCRIPTION

Raises:

ValueError – DESCRIPTION

Returns:

A dictionary containing AnnData objects or nested dictionaries that contain expression and sample metada of the requested experiments

Return type:

dict[int:dict|AnnData]

get_dataset_platforms(dataset, **kwargs)[source]¶

Parameters:

dataset (str|int) – A numerical dataset identifier or a dataset short name
**kwargs –
Additional arguments to pass to raw.get_dataset_platforms

Returns:

A DataFrame with information about the platforms. The fields of the DataFrame are:

platform_ID: Id number of the platform given by Gemma

platform_type: Type of the platform.

platform_description: Free text field describing the platform.

platform_troubled: Whether the platform is marked as troubled by a Gemma curator.

taxon_name: Name of the species

taxon_scientific: Scientific name for the taxon

taxon_ID: Internal identifier given to the species by Gemma

taxon_NCBI: NCBI ID of the taxon

taxon_database_name: Underlying database used in Gemma for the taxon

taxon_database_ID: ID of the underlying database used in Gemma for the taxon

Return type:

DataFrame

get_dataset_processed_expression(dataset, **kwargs)[source]¶

Retrieve processed expression data of a dataset

Parameters:

dataset (str|int) – numerical dataset identifier or a dataset short name
**kwargs –
Additional arguments to pass to raw.get_dataset_processed_expression

Returns:

A DataFrame of the expression matrix for the queried dataset

Return type:

DataFrame

get_dataset_quantitation_types(dataset, **kwargs)[source]¶

Retrieve quantitation types of a dataset

Parameters:

dataset (int|str) – A numerical dataset identifier or a dataset short name
**kwargs –
Additional arguments to pass to raw.get_dataset_quantitation_types

Returns:

A DataFrame containing the quantitation types

The fields of the output DataFrame are:

id: If of the quantitation type. Any raw quantitation type can be
by get_dataset_raw_expression function using this id.
name: Name of the quantitation type
description: Description of the quantitation type
type: Type of the quantitation type. Either raw or processed. Each dataset will have one processed quantitation type which is the data returned using get_dataset_processed_expression
ratio: Whether or not the quanitation type is a ratio of multiple quantitation types. Typically TRUE for processed TWOCOLOR quantitation type.
preferred: The preferred raw quantitation type. This version is used in generation of the processed data within gemma.
recomputed: If TRUE this quantitation type is generated by recomputing raw data files Gemma had access to

Return type:

DataFrame

get_dataset_raw_expression(dataset, quantitation_type, **kwargs)[source]¶

Parameters:

dataset (int|str) – A numerical dataset identifier or a dataset short name
quantitation_type ([int]) – Quantitation type id. These can be acquired using get_dataset_quantitation_types function. This endpoint can only return non-processed quantitation types.
**kwargs –
Additional arguments to pass to raw.get_dataset_raw_expression

Returns:

A DataFrame of the expression matrix for the queried dataset

Return type:

DataFrame

get_dataset_samples(dataset, **kwargs)[source]¶

Retrieve the samples of a dataset

Parameters:

dataset (int|str) – A numerical dataset identifier or a dataset short name
**kwargs –
Additional arguments to pass to raw.get_dataset_samples

Returns:

A DataFrame with information about the samples of the queried dataset.

The fields of the DataFrame are:

sample_name: Internal name given to the sample.
sample_ID: Internal ID of the sample
sample_description: Free text description of the sample
sample_outlier: Whether or not the sample is marked as an outlier
sample_accession: Accession ID of the sample in it’s original database
sample_database: Database of origin for the sample
sample_characteristics: Characteristics of the sample. This field is a data table
sample_factor_values: Experimental factor values of the sample. This field is a data table

Return type:

DataFrame

get_datasets(query=None, filter=None, taxa=None, uris=None, offset=0, limit=20, sort='+id', **kwargs)[source]¶

Parameters:

query (Optional[str], optional) – The search query. Either plain text (‘traumatic’), or an ontology term URI (’http://purl.obolibrary.org/obo/UBERON_0002048’). Datasets that contain the given string in their short of full name will also be matched., defaults to None
filter (Optional[str], optional) – Filter results by matching expression. Use filter_properties function to get a list of all available parameters. These properties can be combined using “and” “or” clauses and may contain common operators such as “=”, “<” or “in”. (e.g. “taxon.commonName = human”, “taxon.commonName in (human,mouse), “id < 1000”), defaults to None
taxa (Optional[List[str]], optional) – A vector of taxon common names (e.g. human, mouse, rat). Providing multiple species will return results for all species. These are appended to the filter and equivalent to filtering for taxon.commonName property, defaults to None
taxa – A list of taxon common names (e.g. human, mouse, rat). Providing multiple species will return results for all species. These are appended to the filter and equivalent to filtering for taxon.commonName property, defaults to None
uris (Optional[List[str]], optional) – A vector of ontology term URIs. Providing multiple terms will return results containing any of the terms and their children. These are appended to the filter and equivalent to filtering for allCharacteristics.valueUri, defaults to None
offset (int, optional) – The offset of the first retrieved result., defaults to 0
limit (int, optional) – Limits the result to specified amount of objects. Has a maximum value of 100. Use together with offset and the total_elements attribute in the output to compile all data if needed. Alternatively get_all_pages function can be used with all functions including offset and limit parameters, defaults to 20
sort (str, optional) – Order results by the given property and direction. The ‘+’ sign indicate ascending order whereas the ‘-’ indicate descending, defaults to “+id”
**kwargs –
Additional arguments to pass to raw.get_datasets

Returns:

A DataFrame with information about the queried dataset(s).

The fields of the DataFrame are:

experiment_short_name: Shortname given to the dataset within Gemma. Often corresponds to accession ID
experiment_name: Full title of the dataset
experiment_ID: Internal ID of the dataset.
experiment_description: Description of the dataset
experiment_troubled: Did an automatic process within gemma or a curator mark the dataset as “troubled”
experiment_accession: Accession ID of the dataset in the external database it was taken from
experiment_database: The name of the database where the dataset was taken from
experiment_URI: URI of the original database
experiment_sample_count: Number of samples in the dataset
experiment_batch_effect_text: A text field describing whether the dataset has batch effects
experimen_batch_corrected: Whether batch correction has been performed on the dataset.
experimen_batch_confound: 0 if batch info isn’t available, -1 if batch counfoud is detected, 1 if batch information is available and no batch confound found
experimen_batch_effect: -1 if batch p value < 0.0001, 1 if batch p value > 0.1, 0 if otherwise and when there is no batch information is available or when the data is confounded with batches.
experimen_raw_data: -1 if no raw data available, 1 if raw data was available. When available, Gemma reprocesses raw data to get expression values and batches
geeq_q_score: Data quality score given to the dataset by Gemma.
geeq_s_score: Suitability score given to the dataset by Gemma. Refers to factors like batches, platforms and other aspects of experimental design
taxon_name: Name of the species
taxon_scientific: Scientific name for the taxon
taxon_ID: Internal identifier given to the species by Gemma
taxon_NCBI: NCBI ID of the taxon
taxon_database_name: Underlying database used in Gemma for the taxon
taxon_database_ID: ID of the underyling database used in Gemma for the taxon

Return type:

DataFrame

get_datasets_by_ids(dataset, filter=None, taxa=None, uris=None, offset=0, limit=20, sort='+id', **kwargs)[source]¶

Parameters:

dataset (List[str|int]) – Numerical dataset identifiers or dataset short names.
filter (Optional[str], optional) – Filter results by matching expression. Use filter_properties function to get a list of all available parameters. These properties can be combined using “and” “or” clauses and may contain common operators such as “=”, “<” or “in”. (e.g. “taxon.commonName = human”, “taxon.commonName in (human,mouse), “id < 1000”), defaults to None
taxa (Optional[List[str]], optional) – A list of taxon common names (e.g. human, mouse, rat). Providing multiple species will return results for all species. These are appended to the filter and equivalent to filtering for taxon.commonName property, defaults to None
uris (Optional[List[str]], optional) – A vector of ontology term URIs. Providing multiple terms will return results containing any of the terms and their children. These are appended to the filter and equivalent to filtering for allCharacteristics.valueUri, defaults to None
offset (int, optional) – The offset of the first retrieved result., defaults to 0
limit (int, optional) – Limits the result to specified amount of objects. Has a maximum value of 100. Use together with offset and the total_elements attribute in the output to compile all data if needed. Alternatively get_all_pages function can be used with all functions including offset and limit parameters, defaults to 20
sort (str, optional) – Order results by the given property and direction. The ‘+’ sign indicate ascending order whereas the ‘-’ indicate descending, defaults to “+id”
**kwargs –
Additional arguments to pass to raw.get_datasets_by_ids

Returns:

A DataFrame with information about the queried dataset(s).

The fields of the DataFrame are:

experiment_short_name: Shortname given to the dataset within Gemma. Often corresponds to accession ID
experiment_name: Full title of the dataset
experiment_ID: Internal ID of the dataset.
experiment_description: Description of the dataset
experiment_troubled: Did an automatic process within gemma or a curator mark the dataset as “troubled”
experiment_accession: Accession ID of the dataset in the external database it was taken from
experiment_database: The name of the database where the dataset was taken from
experiment_URI: URI of the original database
experiment_sample_count: Number of samples in the dataset
experiment_batch_effect_text: A text field describing whether the dataset has batch effects
experimen_batch_corrected: Whether batch correction has been performed on the dataset.
experimen_batch_confound: 0 if batch info isn’t available, -1 if batch counfoud is detected, 1 if batch information is available and no batch confound found
experimen_batch_effect: -1 if batch p value < 0.0001, 1 if batch p value > 0.1, 0 if otherwise and when there is no batch information is available or when the data is confounded with batches.
experimen_raw_data: -1 if no raw data available, 1 if raw data was available. When available, Gemma reprocesses raw data to get expression values and batches
geeq_q_score: Data quality score given to the dataset by Gemma.
geeq_s_score: Suitability score given to the dataset by Gemma. Refers to factors like batches, platforms and other aspects of experimental design
taxon_name: Name of the species
taxon_scientific: Scientific name for the taxon
taxon_ID: Internal identifier given to the species by Gemma
taxon_NCBI: NCBI ID of the taxon
taxon_database_name: Underlying database used in Gemma for the taxon
taxon_database_ID: ID of the underyling database used in Gemma for the taxon

Return type:

DataFrame

get_differential_expression_values(dataset=None, result_sets=None, readable_contrasts=False, **kwargs)[source]¶

Retrieves the differential expression resultSet(s) associated with the dataset. If there is more than one resultSet, use get_result_sets() to see the options and get the ID you want. Alternatively, you can query the resultSet directly if you know its ID beforehand.

In Gemma each result set corresponds to the estimated effects associated with a single factor in the design, and each can have multiple contrasts (for each level compared to baseline). Thus a dataset with a 2x3 factorial design will have two result sets, one of which will have one contrast, and one having two contrasts.

The methodology for differential expression is explained in Curation of over 10000 transcriptomic studies to enable data reuse. Briefly, differential expression analysis is performed on the dataset based on the annotated experimental design with up two three potentially nested factors. Gemma attempts to automatically assign baseline conditions for each factor. In the absence of a clear control condition, a baseline is arbitrarily selected. A generalized linear model with empirical Bayes shrinkage of t-statistics is fit to the data for each platform element (probe/gene) using an implementation of the limma algorithm. For RNA-seq data, we use weighted regression, applying the voom algorithm to compute weights from the mean–variance relationship of the data. Contrasts of each condition are then computed compared to the selected baseline. In some situations, Gemma will split the data into subsets for analysis. A typical such situation is when a ‘batch’ factor is present and confounded with another factor, the subsets being determined by the levels of the confounding factor.

Parameters:

dataset (Optional[str|int], optional) – A dataset identifier, defaults to None
result_sets (Optional[List[str|int]], optional) – result set identifiers. If a dataset is not provided, all result sets will be downloaded. If it is provided it will only be used to ensure all result sets belong to the dataset, defaults to None
readable_contrasts (bool, optional) – If False (default), the returned columns will use internal constrasts IDs as names. Details about the contrasts can be accessed using get_dataset_differential_expression_analyses(). If True IDs will be replaced with human readable contrast information, defaults to False
**kwargs –

Raises:

ValueError – Will return a value error if neither result_sets nor a dataset is provided

Returns:

A list of data frames with differential expression values per result set.

Return type:

List[DataFrame]

get_gene_go_terms(gene, **kwargs)[source]¶

Parameters:

gene (str|int) – An ensembl gene identifier which typically starts with ensg or an ncbi gene identifier or an official gene symbol approved by hgnc
**kwargs –
Additional arguments to pass to raw.get_gene_go_terms

Returns:

A DataFrame with information about the GO terms assigned to the queried gene The fields of the output DataFrame are:

term_name: Name of the term

term_ID: ID of the term

term_URI: URI of the term

Return type:

DataFrame

get_gene_locations(gene, **kwargs)[source]¶

Parameters:

gene (str|int) – DESCRIPTION
**kwargs –
DAdditional arguments to pass to raw.get_gene_locations

Returns:

A DataFrame with information about the physical location of the queried gene The fields of the output DataFrame are:

chromosome: Name of the chromosome the gene is located

strand: Which strand the gene is located

nucleotide: Nucleotide number for the gene

length: Gene length

taxon_name: Name of the species

taxon_scientific: Scientific name for the taxon

taxon_ID: Internal identifier given to the species by Gemma

taxon_NCBI: NCBI ID of the taxon

taxon_database_name: Underlying database used in Gemma for the taxon

taxon_database_ID: ID of the underlying database used in Gemma for the taxon

Return type:

DataFrame

get_gene_probes(gene, offset=0, limit=20, **kwargs)[source]¶

Retrieve the probes associated to a genes across all platforms

Parameters:

gene (str|int) – An ensembl gene identifier which typically starts with ensg or an ncbi gene identifier or an official gene symbol approved by hgnc
offset (int, optional) – The offset of the first retrieved result., defaults to 0
limit (int, optional) – Limits the result to specified amount of objects. Has a maximum value of 100. Use together with offset and the total_elements attribute in the output to compile all data if needed. Alternatively get_all_pages function can be used with all functions including offset and limit parameters, defaults to 20
**kwargs –
Additional arguments to pass to raw.get_gene_probes

Returns:

A DataFrame with information about the probes representing a gene across all platrofms.

The fields of the output DataFrame are:

element_name: Name of the element. Typically the probeset name
element_description: A free text field providing optional information about the element
platform_short_name: Shortname of the platform given by Gemma. Typically the GPL identifier.
platform_name: Full name of the platform
platform_ID: Id number of the platform given by Gemma
platform_type: Type of the platform.
platform_description: Free text field describing the platform.
platform_troubled: Whether the platform is marked as troubled by a Gemma curator.
taxon_name: Name of the species
taxon_scientific: Scientific name for the taxon
taxon_ID: Internal identifier given to the species by Gemma
taxon_NCBI: NCBI ID of the taxon
taxon_database_name: Underlying database used in Gemma for the taxon
taxon_database_ID: ID of the underlying database used in Gemma for the taxon

Return type:

DataFrame

get_genes(genes, **kwargs)[source]¶

Retrieve genes matching gene identifiers

Parameters:

genes (int|str) – An ensembl gene identifier which typically starts with ensg or an ncbi gene identifier or an official gene symbol approved by hgnc
**kwargs –
Additional arguments to pass to raw_get_genes

Returns:

A DataFrame with the information about the querried genes.

The fields of the output DataFrame are:

gene_symbol: Symbol for the gene
gene_ensembl: Ensembl ID for the gene
gene_NCBI: NCBI id for the gene
gene_name: Name of the gene
gene_aliases: Gene aliases. Each row includes a vector
gene_MFX_rank: Multifunctionality rank for the gene
taxon_name: Name of the species
taxon_scientific: Scientific name for the taxon
taxon_ID: Internal identifier given to the species by Gemma
taxon_NCBI: NCBI ID of the taxon
taxon_database_name: Underlying database used in Gemma for the taxon
taxon_database_ID: ID of the underlying database used in Gemma for the taxon

Return type:

DataFrame

get_platform_annotations(platform, **kwargs)[source]¶

Gets Gemma’s platform annotations including mappings of microarray probes to genes.

Parameters:

platform (int|str) – A platform numerical identifier or a platform short name
**kwargs –
Additional arguments to pass to raw.get_platform_annotations

Returns:

A DataFrame of annotations

ProbeName: Probeset names provided by the platform. Gene symbols for generic annotations
GeneSymbols: Genes that were found to be aligned to the probe sequence. Note that it is possible for probes to be non-specific. Alignment to multiple genes are indicated with gene symbols separated by “|”s
GeneNames: Name of the gene
GOTerms: GO Terms associated with the genes. annotType argument can be used to choose which terms should be included.
GemmaIDs and NCBIids: respective IDs for the genes.

Return type:

DataFrame

get_platform_datasets(platform, offset=0, limit=20, **kwargs)[source]¶

Retrieve all experiments using a given platform

Parameters:

platform (str|int) – A platform numerical identifier or a platform short name
offset (int, optional) – The offset of the first retrieved result., defaults to 0
limit (int, optional) – Limits the result to specified amount of objects. Has a maximum value of 100. Use together with offset and the total_elements attribute in the output to compile all data if needed. Alternatively get_all_pages function can be used with all functions including offset and limit parameters, defaults to 20
**kwargs –
Additional arguments to pass to raw.get_platform_datasets

Returns:

A DataFrame with information about the queried dataset(s).

The fields of the DataFrame are:

experiment_short_name: Shortname given to the dataset within Gemma. Often corresponds to accession ID
experiment_name: Full title of the dataset
experiment_ID: Internal ID of the dataset.
experiment_description: Description of the dataset
experiment_troubled: Did an automatic process within gemma or a curator mark the dataset as “troubled”
experiment_accession: Accession ID of the dataset in the external database it was taken from
experiment_database: The name of the database where the dataset was taken from
experiment_URI: URI of the original database
experiment_sample_count: Number of samples in the dataset
experiment_batch_effect_text: A text field describing whether the dataset has batch effects
experimen_batch_corrected: Whether batch correction has been performed on the dataset.
experimen_batch_confound: 0 if batch info isn’t available, -1 if batch counfoud is detected, 1 if batch information is available and no batch confound found
experimen_batch_effect: -1 if batch p value < 0.0001, 1 if batch p value > 0.1, 0 if otherwise and when there is no batch information is available or when the data is confounded with batches.
experimen_raw_data: -1 if no raw data available, 1 if raw data was available. When available, Gemma reprocesses raw data to get expression values and batches
geeq_q_score: Suitability score given to the dataset by Gemma. Refers to factors like batches, platforms and other aspects of experimental design
geeq_s_score: Data quality score given to the dataset by Gemma.
taxon_name: Name of the species
taxon_scientific: Scientific name for the taxon
taxon_ID: Internal identifier given to the species by Gemma
taxon_NCBI: NCBI ID of the taxon
taxon_database_name: Underlying database used in Gemma for the taxon
taxon_database_ID: ID of the underyling database used in Gemma for the taxon

Return type:

DataFrame

get_platform_element_genes(platform, probe, offset=0, limit=20, **kwargs)[source]¶

Retrieve the genes associated to a probe in a given platform

Parameters:

platform (str|int) – A platform numerical identifier or a platform short name
probe (str|int) – A probe name or it’s numerical identifier
offset (int, optional) – The offset of the first retrieved result., defaults to 0
limit (int, optional) – Limits the result to specified amount of objects. Has a maximum value of 100. Use together with offset and the total_elements attribute in the output to compile all data if needed. Alternatively get_all_pages function can be used with all functions including offset and limit parameters, defaults to 20
**kwargs –
Additional arguments to pass to raw.get_platform_element_genes

Returns:

A DataFrame with the information about querried gene(s). The fields of the output DataFrame are:

gene_symbol: Symbol for the gene

gene_ensembl: Ensembl ID for the gene

gene_NCBI: NCBI id for the gene

gene_name: Name of the gene

gene_aliases: Gene aliases. Each row includes a vector

gene_MFX_rank: Multifunctionality rank for the gene

taxon_name: Name of the species

taxon_scientific: Scientific name for the taxon

taxon_ID: Internal identifier given to the species by Gemma

taxon_NCBI: NCBI ID of the taxon

taxon_database_name: Underlying database used in Gemma for the taxon

taxon_database_ID: ID of the underlying database used in Gemma for the taxon

Return type:

DataFrame

get_platforms(filter=None, taxa=None, offset=0, limit=20, sort='+id', **kwargs)[source]¶

Retrieve all platforms

Parameters:

filter (str, optional) – Filter results by matching expression. Use filter_properties function to get a list of all available parameters. These properties can be combined using “and” “or” clauses and may contain common operators such as “=”, “<” or “in”. (e.g. “taxon.commonName = human”, “taxon.commonName in (human,mouse), “id < 1000”), defaults to None
taxa (List[str], optional) – A list of taxon common names (e.g. human, mouse, rat). Providing multiple species will return results for all species. These are appended to the filter and equivalent to filtering for taxon.commonName property, defaults to None
offset (int, optional) – The offset of the first retrieved result., defaults to 0
limit (int, optional) – Limits the result to specified amount of objects. Has a maximum value of 100. Use together with offset and the total_elements attribute in the output to compile all data if needed. Alternatively get_all_pages function can be used with all functions including offset and limit parameters, defaults to 20
sort (str, optional) – Order results by the given property and direction. The ‘+’ sign indicate ascending order whereas the ‘-’ indicate descending, defaults to “+id”
**kwargs –
Additional arguments to raw.get_platforms_by_ids

Returns:

A DataFrame with information about the platform(s).

The fields of the output DataFrame are:

platform_ID: Internal identifier of the platform

platform_short_name: Shortname of the platform.

platform_name: Full name of the platform.

platform_description: Free text description of the platform

platform_troubled: Whether or not the platform was marked “troubled” by a Gemma process or a curator

platform_experiment_count: Number of experiments using the platform within Gemma

platform_type: Technology type for the platform.

taxon_name: Name of the species platform was made for

taxon_scientific: Scientific name for the taxon

taxon_ID: Internal identifier given to the species by Gemma

taxon_NCBI: NCBI ID of the taxon

taxon_database_name: Underlying database used in Gemma for the taxon

taxon_database_ID: ID of the underyling database used in Gemma for the taxon

Return type:

DataFrame

get_platforms_by_ids(platforms, filter=None, taxa=None, offset=0, limit=20, sort='+id', **kwargs)[source]¶

Retrieve platforms by their identifiers

Parameters:

platforms (List[str|int]) – Platform numerical identifiers or platform short names.
filter (str, optional) – Filter results by matching expression. Use filter_properties function to get a list of all available parameters. These properties can be combined using “and” “or” clauses and may contain common operators such as “=”, “<” or “in”. (e.g. “taxon.commonName = human”, “taxon.commonName in (human,mouse), “id < 1000”), defaults to None
taxa (List[str], optional) – A list of taxon common names (e.g. human, mouse, rat). Providing multiple species will return results for all species. These are appended to the filter and equivalent to filtering for taxon.commonName property, defaults to None
offset (int, optional) – The offset of the first retrieved result., defaults to 0
limit (int, optional) – Limits the result to specified amount of objects. Has a maximum value of 100. Use together with offset and the total_elements attribute in the output to compile all data if needed. Alternatively get_all_pages function can be used with all functions including offset and limit parameters, defaults to 20
sort (str, optional) – Order results by the given property and direction. The ‘+’ sign indicate ascending order whereas the ‘-’ indicate descending, defaults to “+id”
**kwargs –
Additional arguments to raw.get_platforms_by_ids

Returns:

A DataFrame with information about the platform(s).

The fields of the output DataFrame are:

platform_ID: Internal identifier of the platform

platform_short_name: Shortname of the platform.

platform_name: Full name of the platform.

platform_description: Free text description of the platform

platform_troubled: Whether or not the platform was marked “troubled” by a Gemma process or a curator

platform_experiment_count: Number of experiments using the platform within Gemma

platform_type: Technology type for the platform.

taxon_name: Name of the species platform was made for

taxon_scientific: Scientific name for the taxon

taxon_ID: Internal identifier given to the species by Gemma

taxon_NCBI: NCBI ID of the taxon

taxon_database_name: Underlying database used in Gemma for the taxon

taxon_database_ID: ID of the underyling database used in Gemma for the taxon

Return type:

DataFrame

get_result_sets(datasets=None, result_sets=None, filter=None, offset=0, limit=20, sort='+id', **kwargs)[source]¶

Returns queried result set

Output and usage of this function is mostly identical to get_dataset_differential_expression_analyses. The principal difference being the ability to restrict your result sets, being able to query across multiple datasets and being able to use the filter argument to search based on result set properties.

Parameters:

datasets (Optional[List[str|int]], optional) – A numerical dataset identifier or a dataset short name, defaults to None
result_sets (Optional[List[int]], optional) – A result set identifier. Note that result set identifiers are not static and can change when Gemma re-runs analyses internally. Whem using these as inputs, try to make sure you access a currently existing result set ID by basing them on result sets returned for a particular dataset or filter used in get_result_sets, defaults to None
filter (str, optional) – Filter results by matching expression. Use filter_properties function to get a list of all available parameters. These properties can be combined using “and” “or” clauses and may contain common operators such as “=”, “<” or “in”. (e.g. “taxon.commonName = human”, “taxon.commonName in (human,mouse), “id < 1000”), defaults to None
offset (int, optional) – The offset of the first retrieved result., defaults to 0
limit (int, optional) – Limits the result to specified amount of objects. Has a maximum value of 100. Use together with offset and the total_elements attribute in the output to compile all data if needed. Alternatively get_all_pages function can be used with all functions including offset and limit parameters, defaults to 20
sort (str, optional) – Order results by the given property and direction. The ‘+’ sign indicate ascending order whereas the ‘-’ indicate descending, defaults to “+id”
**kwargs –
Additional arguments to pass to raw.get_result_sets

Returns:

A DataFrame with information about the queried result sets. Note that this function does not return differential expression values themselves

The fields of the DataFrame are:

result_ID: Result set ID of the differential expression analysis. May represent multiple factors in a single model.
contrast_ID: Id of the specific contrast factor. Together with the result.ID they uniquely represent a given contrast.
experiment_ID: Id of the source experiment
factor_category: Category for the contrast
factor_category_URI: URI for the baseline category
factor_ID: ID of the factor
baseline_factors: Characteristics of the baseline. This field is a DataFrame
experimental_factors: Characteristics of the experimental group. This field is a DataFrame
is_subset: True if the result set belong to a subset, False if not. Subsets are created when performing differential expression to avoid unhelpful comparisons.
subset_factor: Characteristics of the subset. This field is a DataFrame

Return type:

DataFrame

get_taxa(**kwargs)[source]¶

Get all taxa within Gemma

Parameters:

**kwargs –

Additional arguments to raw.get_taxa

Returns:

A DataFrame including the names, IDs and database information about the taxons

Return type:

DataFrame

make_design(samples, meta_type='text')[source]¶

Using on the output of get_dataset_samples, this function creates a simplified design table, granting one column to each experimental variable

Parameters:

samples (DataFrame) – An output from get_dataset_samples.
meta_type (str, optional) – Type of metadata to include in the output. “text”, “uri” or “both”, defaults to ‘text’

Returns:

A DataFrame including the design table for the dataset

Return type:

DataFrame

search_annotations(query, **kwargs)[source]¶

Search for annotation tags

Parameters:

query (List[str]) – The search query
**kwargs –
Additional arguments to pass to raw.search_annotations

Returns:

A DataFrame with annotations matching the given identifiers. The fields of the DataFrame are:

category_name: Category that the annotation belongs to

category_URI: URI for the category_name

value_name: Annotation term

value_URI: URI for the value_name

Return type:

DataFrame

search_gemma(query, taxon=None, platform=None, limit=100, result_type='experiment', **kwargs)[source]¶

Search everything in Gemma

Parameters:

query (str) – The search query. Either plain text (‘traumatic’), or an ontology term URI (’http://purl.obolibrary.org/obo/UBERON_0002048’). Datasets that contain the given string in their short of full name will also be matched. Can be multiple identifiers separated by commas.
taxon (Optional[str|int], optional) – A numerical taxon identifier or an ncbi taxon identifier or a taxon identifier that matches either its scientific or common name, defaults to None
platform (Optional[str|int], optional) – A platform numerical identifier or a platform short name, defaults to None
limit (int, optional) – Defaults to 100 with a maximum value of 2000. Limits the number of returned results. Note that this function does not support pagination., defaults to 100
result_type (str, optional) – The kind of results that should be included in the output. Can be “experiment”, “gene”, “platform” or a long object type name, documented in the API documentation., defaults to “experiment”
**kwargs –
Additional arguments to raw.search

Returns:

A list containing the results. Actual results are under the result_object component as dicts

Return type:

list[sdk.SearchResultValueObjectObject]

gemmapy.sdk.models Subpackage¶

The subpackage contains most of classes which instances are returned by GemmaPy methods.

Gemma RESTful API

This website documents the usage of the [Gemma RESTful API](https://gemma.msl.ubc.ca/rest/v2/). Here you can find example script usage of the API, as well as graphical interface for each endpoint, with description of its parameters and the endpoint URL. Use of this webpage and the Gemma Web services, including the REST API, is subject to [these terms and conditions](https://pavlidislab.github.io/Gemma/terms.html). Please read these in full before continuing to use this webpage or any other part of the Gemma system. You can [consult the CHANGELOG.md file](https://gemma.msl.ubc.ca/resources/restapidocs/CHANGELOG.md) to view release notes and recent changes to the Gemma RESTful API. # noqa: E501

OpenAPI spec version: 2.7.4 Contact: pavlab-support@msl.ubc.ca Generated by: https://github.com/swagger-api/swagger-codegen.git

class gemmapy.sdk.models.AnnotationSearchResultValueObject(value=None, value_uri=None, category=None, category_uri=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

AnnotationSearchResultValueObject - a model defined in Swagger

attribute_map = {'category': 'category', 'category_uri': 'categoryUri', 'value': 'value', 'value_uri': 'valueUri'}¶

property category¶

Gets the category of this AnnotationSearchResultValueObject. # noqa: E501

Returns:: The category of this AnnotationSearchResultValueObject. # noqa: E501
Return type:: str

property category_uri¶

Gets the category_uri of this AnnotationSearchResultValueObject. # noqa: E501

Returns:: The category_uri of this AnnotationSearchResultValueObject. # noqa: E501
Return type:: str

swagger_types = {'category': 'str', 'category_uri': 'str', 'value': 'str', 'value_uri': 'str'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

property value¶

Gets the value of this AnnotationSearchResultValueObject. # noqa: E501

Returns:: The value of this AnnotationSearchResultValueObject. # noqa: E501
Return type:: str

property value_uri¶

Gets the value_uri of this AnnotationSearchResultValueObject. # noqa: E501

Returns:: The value_uri of this AnnotationSearchResultValueObject. # noqa: E501
Return type:: str

class gemmapy.sdk.models.AnnotationValueObject(id=None, class_uri=None, class_name=None, term_uri=None, term_name=None, evidence_code=None, object_class=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

AnnotationValueObject - a model defined in Swagger

attribute_map = {'class_name': 'className', 'class_uri': 'classUri', 'evidence_code': 'evidenceCode', 'id': 'id', 'object_class': 'objectClass', 'term_name': 'termName', 'term_uri': 'termUri'}¶

property class_name¶

Gets the class_name of this AnnotationValueObject. # noqa: E501

Returns:: The class_name of this AnnotationValueObject. # noqa: E501
Return type:: str

property class_uri¶

Gets the class_uri of this AnnotationValueObject. # noqa: E501

Returns:: The class_uri of this AnnotationValueObject. # noqa: E501
Return type:: str

property evidence_code¶

Gets the evidence_code of this AnnotationValueObject. # noqa: E501

Returns:: The evidence_code of this AnnotationValueObject. # noqa: E501
Return type:: str

property id¶

Gets the id of this AnnotationValueObject. # noqa: E501

Returns:: The id of this AnnotationValueObject. # noqa: E501
Return type:: int

property object_class¶

Gets the object_class of this AnnotationValueObject. # noqa: E501

Returns:: The object_class of this AnnotationValueObject. # noqa: E501
Return type:: str

swagger_types = {'class_name': 'str', 'class_uri': 'str', 'evidence_code': 'str', 'id': 'int', 'object_class': 'str', 'term_name': 'str', 'term_uri': 'str'}¶

property term_name¶

Gets the term_name of this AnnotationValueObject. # noqa: E501

Returns:: The term_name of this AnnotationValueObject. # noqa: E501
Return type:: str

property term_uri¶

Gets the term_uri of this AnnotationValueObject. # noqa: E501

Returns:: The term_uri of this AnnotationValueObject. # noqa: E501
Return type:: str

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.AnnotationWithUsageStatisticsValueObject(class_uri=None, class_name=None, term_uri=None, term_name=None, evidence_code=None, number_of_expression_experiments=None, parent_terms=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

AnnotationWithUsageStatisticsValueObject - a model defined in Swagger

attribute_map = {'class_name': 'className', 'class_uri': 'classUri', 'evidence_code': 'evidenceCode', 'number_of_expression_experiments': 'numberOfExpressionExperiments', 'parent_terms': 'parentTerms', 'term_name': 'termName', 'term_uri': 'termUri'}¶

property class_name¶

Gets the class_name of this AnnotationWithUsageStatisticsValueObject. # noqa: E501

Returns:: The class_name of this AnnotationWithUsageStatisticsValueObject. # noqa: E501
Return type:: str

property class_uri¶

Gets the class_uri of this AnnotationWithUsageStatisticsValueObject. # noqa: E501

Returns:: The class_uri of this AnnotationWithUsageStatisticsValueObject. # noqa: E501
Return type:: str

property evidence_code¶

Gets the evidence_code of this AnnotationWithUsageStatisticsValueObject. # noqa: E501

Returns:: The evidence_code of this AnnotationWithUsageStatisticsValueObject. # noqa: E501
Return type:: str

property number_of_expression_experiments¶

Gets the number_of_expression_experiments of this AnnotationWithUsageStatisticsValueObject. # noqa: E501

Returns:: The number_of_expression_experiments of this AnnotationWithUsageStatisticsValueObject. # noqa: E501
Return type:: int

property parent_terms¶

Gets the parent_terms of this AnnotationWithUsageStatisticsValueObject. # noqa: E501

Returns:: The parent_terms of this AnnotationWithUsageStatisticsValueObject. # noqa: E501
Return type:: list[OntologyTermValueObject]

swagger_types = {'class_name': 'str', 'class_uri': 'str', 'evidence_code': 'str', 'number_of_expression_experiments': 'int', 'parent_terms': 'list[OntologyTermValueObject]', 'term_name': 'str', 'term_uri': 'str'}¶

property term_name¶

Gets the term_name of this AnnotationWithUsageStatisticsValueObject. # noqa: E501

Returns:: The term_name of this AnnotationWithUsageStatisticsValueObject. # noqa: E501
Return type:: str

property term_uri¶

Gets the term_uri of this AnnotationWithUsageStatisticsValueObject. # noqa: E501

Returns:: The term_uri of this AnnotationWithUsageStatisticsValueObject. # noqa: E501
Return type:: str

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.ApiInfoValueObject(welcome=None, version=None, docs=None, external_databases=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

ApiInfoValueObject - a model defined in Swagger

attribute_map = {'docs': 'docs', 'external_databases': 'externalDatabases', 'version': 'version', 'welcome': 'welcome'}¶

property docs¶

Gets the docs of this ApiInfoValueObject. # noqa: E501

Returns:: The docs of this ApiInfoValueObject. # noqa: E501
Return type:: str

property external_databases¶

Gets the external_databases of this ApiInfoValueObject. # noqa: E501

Returns:: The external_databases of this ApiInfoValueObject. # noqa: E501
Return type:: list[ExternalDatabaseValueObject]

swagger_types = {'docs': 'str', 'external_databases': 'list[ExternalDatabaseValueObject]', 'version': 'str', 'welcome': 'str'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

property version¶

Gets the version of this ApiInfoValueObject. # noqa: E501

Returns:: The version of this ApiInfoValueObject. # noqa: E501
Return type:: str

property welcome¶

Gets the welcome of this ApiInfoValueObject. # noqa: E501

Returns:: The welcome of this ApiInfoValueObject. # noqa: E501
Return type:: str

class gemmapy.sdk.models.ArrayDesignValueObject(id=None, last_updated=None, troubled=None, last_troubled_event=None, needs_attention=None, last_needs_attention_event=None, curation_note=None, last_note_update_event=None, color=None, description=None, expression_experiment_count=None, is_merged=None, is_mergee=None, name=None, short_name=None, technology_type=None, release_version=None, release_url=None, external_references=None, taxon_id=None, number_of_expression_experiments=None, trouble_details=None, number_of_switched_expression_experiments=None, taxon=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

ArrayDesignValueObject - a model defined in Swagger

attribute_map = {'color': 'color', 'curation_note': 'curationNote', 'description': 'description', 'expression_experiment_count': 'expressionExperimentCount', 'external_references': 'externalReferences', 'id': 'id', 'is_merged': 'isMerged', 'is_mergee': 'isMergee', 'last_needs_attention_event': 'lastNeedsAttentionEvent', 'last_note_update_event': 'lastNoteUpdateEvent', 'last_troubled_event': 'lastTroubledEvent', 'last_updated': 'lastUpdated', 'name': 'name', 'needs_attention': 'needsAttention', 'number_of_expression_experiments': 'numberOfExpressionExperiments', 'number_of_switched_expression_experiments': 'numberOfSwitchedExpressionExperiments', 'release_url': 'releaseUrl', 'release_version': 'releaseVersion', 'short_name': 'shortName', 'taxon': 'taxon', 'taxon_id': 'taxonID', 'technology_type': 'technologyType', 'trouble_details': 'troubleDetails', 'troubled': 'troubled'}¶

property color¶

Gets the color of this ArrayDesignValueObject. # noqa: E501

Returns:: The color of this ArrayDesignValueObject. # noqa: E501
Return type:: str

property curation_note¶

Gets the curation_note of this ArrayDesignValueObject. # noqa: E501

Returns:: The curation_note of this ArrayDesignValueObject. # noqa: E501
Return type:: str

property description¶

Gets the description of this ArrayDesignValueObject. # noqa: E501

Returns:: The description of this ArrayDesignValueObject. # noqa: E501
Return type:: str

property expression_experiment_count¶

Gets the expression_experiment_count of this ArrayDesignValueObject. # noqa: E501

Returns:: The expression_experiment_count of this ArrayDesignValueObject. # noqa: E501
Return type:: int

property external_references¶

Gets the external_references of this ArrayDesignValueObject. # noqa: E501

Returns:: The external_references of this ArrayDesignValueObject. # noqa: E501
Return type:: list[DatabaseEntryValueObject]

property id¶

Gets the id of this ArrayDesignValueObject. # noqa: E501

Returns:: The id of this ArrayDesignValueObject. # noqa: E501
Return type:: int

property is_merged¶

Gets the is_merged of this ArrayDesignValueObject. # noqa: E501

Returns:: The is_merged of this ArrayDesignValueObject. # noqa: E501
Return type:: bool

property is_mergee¶

Gets the is_mergee of this ArrayDesignValueObject. # noqa: E501

Returns:: The is_mergee of this ArrayDesignValueObject. # noqa: E501
Return type:: bool

property last_needs_attention_event¶

Gets the last_needs_attention_event of this ArrayDesignValueObject. # noqa: E501

Returns:: The last_needs_attention_event of this ArrayDesignValueObject. # noqa: E501
Return type:: AuditEventValueObject

property last_note_update_event¶

Gets the last_note_update_event of this ArrayDesignValueObject. # noqa: E501

Returns:: The last_note_update_event of this ArrayDesignValueObject. # noqa: E501
Return type:: AuditEventValueObject

property last_troubled_event¶

Gets the last_troubled_event of this ArrayDesignValueObject. # noqa: E501

Returns:: The last_troubled_event of this ArrayDesignValueObject. # noqa: E501
Return type:: AuditEventValueObject

property last_updated¶

Gets the last_updated of this ArrayDesignValueObject. # noqa: E501

Returns:: The last_updated of this ArrayDesignValueObject. # noqa: E501
Return type:: datetime

property name¶

Gets the name of this ArrayDesignValueObject. # noqa: E501

Returns:: The name of this ArrayDesignValueObject. # noqa: E501
Return type:: str

property needs_attention¶

Gets the needs_attention of this ArrayDesignValueObject. # noqa: E501

Returns:: The needs_attention of this ArrayDesignValueObject. # noqa: E501
Return type:: bool

property number_of_expression_experiments¶

Gets the number_of_expression_experiments of this ArrayDesignValueObject. # noqa: E501

Returns:: The number_of_expression_experiments of this ArrayDesignValueObject. # noqa: E501
Return type:: int

property number_of_switched_expression_experiments¶

Gets the number_of_switched_expression_experiments of this ArrayDesignValueObject. # noqa: E501

Returns:: The number_of_switched_expression_experiments of this ArrayDesignValueObject. # noqa: E501
Return type:: int

property release_url¶

Gets the release_url of this ArrayDesignValueObject. # noqa: E501

Returns:: The release_url of this ArrayDesignValueObject. # noqa: E501
Return type:: str

property release_version¶

Gets the release_version of this ArrayDesignValueObject. # noqa: E501

Returns:: The release_version of this ArrayDesignValueObject. # noqa: E501
Return type:: str

property short_name¶

Gets the short_name of this ArrayDesignValueObject. # noqa: E501

Returns:: The short_name of this ArrayDesignValueObject. # noqa: E501
Return type:: str

swagger_types = {'color': 'str', 'curation_note': 'str', 'description': 'str', 'expression_experiment_count': 'int', 'external_references': 'list[DatabaseEntryValueObject]', 'id': 'int', 'is_merged': 'bool', 'is_mergee': 'bool', 'last_needs_attention_event': 'AuditEventValueObject', 'last_note_update_event': 'AuditEventValueObject', 'last_troubled_event': 'AuditEventValueObject', 'last_updated': 'datetime', 'name': 'str', 'needs_attention': 'bool', 'number_of_expression_experiments': 'int', 'number_of_switched_expression_experiments': 'int', 'release_url': 'str', 'release_version': 'str', 'short_name': 'str', 'taxon': 'TaxonValueObject', 'taxon_id': 'int', 'technology_type': 'str', 'trouble_details': 'str', 'troubled': 'bool'}¶

property taxon¶

Gets the taxon of this ArrayDesignValueObject. # noqa: E501

Returns:: The taxon of this ArrayDesignValueObject. # noqa: E501
Return type:: TaxonValueObject

property taxon_id¶

Gets the taxon_id of this ArrayDesignValueObject. # noqa: E501

Returns:: The taxon_id of this ArrayDesignValueObject. # noqa: E501
Return type:: int

property technology_type¶

Gets the technology_type of this ArrayDesignValueObject. # noqa: E501

Returns:: The technology_type of this ArrayDesignValueObject. # noqa: E501
Return type:: str

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

property trouble_details¶

Gets the trouble_details of this ArrayDesignValueObject. # noqa: E501

Returns:: The trouble_details of this ArrayDesignValueObject. # noqa: E501
Return type:: str

property troubled¶

Gets the troubled of this ArrayDesignValueObject. # noqa: E501

Returns:: The troubled of this ArrayDesignValueObject. # noqa: E501
Return type:: bool

class gemmapy.sdk.models.ArrayDesignWithUsageStatisticsValueObject(id=None, last_updated=None, troubled=None, last_troubled_event=None, needs_attention=None, last_needs_attention_event=None, curation_note=None, last_note_update_event=None, color=None, description=None, is_merged=None, is_mergee=None, name=None, short_name=None, technology_type=None, release_version=None, release_url=None, external_references=None, number_of_expression_experiments_for_technology_type=None, number_of_expression_experiments=None, taxon_id=None, trouble_details=None, taxon=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

ArrayDesignWithUsageStatisticsValueObject - a model defined in Swagger

attribute_map = {'color': 'color', 'curation_note': 'curationNote', 'description': 'description', 'external_references': 'externalReferences', 'id': 'id', 'is_merged': 'isMerged', 'is_mergee': 'isMergee', 'last_needs_attention_event': 'lastNeedsAttentionEvent', 'last_note_update_event': 'lastNoteUpdateEvent', 'last_troubled_event': 'lastTroubledEvent', 'last_updated': 'lastUpdated', 'name': 'name', 'needs_attention': 'needsAttention', 'number_of_expression_experiments': 'numberOfExpressionExperiments', 'number_of_expression_experiments_for_technology_type': 'numberOfExpressionExperimentsForTechnologyType', 'release_url': 'releaseUrl', 'release_version': 'releaseVersion', 'short_name': 'shortName', 'taxon': 'taxon', 'taxon_id': 'taxonID', 'technology_type': 'technologyType', 'trouble_details': 'troubleDetails', 'troubled': 'troubled'}¶

property color¶

Gets the color of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501

Returns:: The color of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501
Return type:: str

property curation_note¶

Gets the curation_note of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501

Returns:: The curation_note of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501
Return type:: str

property description¶

Gets the description of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501

Returns:: The description of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501
Return type:: str

property external_references¶

Gets the external_references of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501

Returns:: The external_references of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501
Return type:: list[DatabaseEntryValueObject]

property id¶

Gets the id of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501

Returns:: The id of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501
Return type:: int

property is_merged¶

Gets the is_merged of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501

Returns:: The is_merged of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501
Return type:: bool

property is_mergee¶

Gets the is_mergee of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501

Returns:: The is_mergee of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501
Return type:: bool

property last_needs_attention_event¶

Gets the last_needs_attention_event of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501

Returns:: The last_needs_attention_event of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501
Return type:: AuditEventValueObject

property last_note_update_event¶

Gets the last_note_update_event of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501

Returns:: The last_note_update_event of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501
Return type:: AuditEventValueObject

property last_troubled_event¶

Gets the last_troubled_event of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501

Returns:: The last_troubled_event of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501
Return type:: AuditEventValueObject

property last_updated¶

Gets the last_updated of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501

Returns:: The last_updated of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501
Return type:: datetime

property name¶

Gets the name of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501

Returns:: The name of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501
Return type:: str

property needs_attention¶

Gets the needs_attention of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501

Returns:: The needs_attention of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501
Return type:: bool

property number_of_expression_experiments¶

Gets the number_of_expression_experiments of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501

Returns:: The number_of_expression_experiments of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501
Return type:: int

property number_of_expression_experiments_for_technology_type¶

Gets the number_of_expression_experiments_for_technology_type of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501

Returns:: The number_of_expression_experiments_for_technology_type of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501
Return type:: int

property release_url¶

Gets the release_url of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501

Returns:: The release_url of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501
Return type:: str

property release_version¶

Gets the release_version of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501

Returns:: The release_version of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501
Return type:: str

property short_name¶

Gets the short_name of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501

Returns:: The short_name of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501
Return type:: str

swagger_types = {'color': 'str', 'curation_note': 'str', 'description': 'str', 'external_references': 'list[DatabaseEntryValueObject]', 'id': 'int', 'is_merged': 'bool', 'is_mergee': 'bool', 'last_needs_attention_event': 'AuditEventValueObject', 'last_note_update_event': 'AuditEventValueObject', 'last_troubled_event': 'AuditEventValueObject', 'last_updated': 'datetime', 'name': 'str', 'needs_attention': 'bool', 'number_of_expression_experiments': 'int', 'number_of_expression_experiments_for_technology_type': 'int', 'release_url': 'str', 'release_version': 'str', 'short_name': 'str', 'taxon': 'TaxonValueObject', 'taxon_id': 'int', 'technology_type': 'str', 'trouble_details': 'str', 'troubled': 'bool'}¶

property taxon¶

Gets the taxon of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501

Returns:: The taxon of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501
Return type:: TaxonValueObject

property taxon_id¶

Gets the taxon_id of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501

Returns:: The taxon_id of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501
Return type:: int

property technology_type¶

Gets the technology_type of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501

Returns:: The technology_type of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501
Return type:: str

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

property trouble_details¶

Gets the trouble_details of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501

Returns:: The trouble_details of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501
Return type:: str

property troubled¶

Gets the troubled of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501

Returns:: The troubled of this ArrayDesignWithUsageStatisticsValueObject. # noqa: E501
Return type:: bool

class gemmapy.sdk.models.AuditEventValueObject(id=None, performer=None, _date=None, action=None, note=None, detail=None, event_type_name=None, action_name=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

AuditEventValueObject - a model defined in Swagger

property action¶

Gets the action of this AuditEventValueObject. # noqa: E501

Returns:: The action of this AuditEventValueObject. # noqa: E501
Return type:: str

property action_name¶

Gets the action_name of this AuditEventValueObject. # noqa: E501

Returns:: The action_name of this AuditEventValueObject. # noqa: E501
Return type:: str

attribute_map = {'_date': 'date', 'action': 'action', 'action_name': 'actionName', 'detail': 'detail', 'event_type_name': 'eventTypeName', 'id': 'id', 'note': 'note', 'performer': 'performer'}¶

property detail¶

Gets the detail of this AuditEventValueObject. # noqa: E501

Returns:: The detail of this AuditEventValueObject. # noqa: E501
Return type:: str

property event_type_name¶

Gets the event_type_name of this AuditEventValueObject. # noqa: E501

Returns:: The event_type_name of this AuditEventValueObject. # noqa: E501
Return type:: str

property id¶

Gets the id of this AuditEventValueObject. # noqa: E501

Returns:: The id of this AuditEventValueObject. # noqa: E501
Return type:: int

property note¶

Gets the note of this AuditEventValueObject. # noqa: E501

Returns:: The note of this AuditEventValueObject. # noqa: E501
Return type:: str

property performer¶

Gets the performer of this AuditEventValueObject. # noqa: E501

Returns:: The performer of this AuditEventValueObject. # noqa: E501
Return type:: str

swagger_types = {'_date': 'datetime', 'action': 'str', 'action_name': 'str', 'detail': 'str', 'event_type_name': 'str', 'id': 'int', 'note': 'str', 'performer': 'str'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.BibliographicPhenotypesValueObject(gene_ncbi=None, gene_name=None, evidence_id=None, phenotypes_values=None, all_id_of_phenotype=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

BibliographicPhenotypesValueObject - a model defined in Swagger

property all_id_of_phenotype¶

Gets the all_id_of_phenotype of this BibliographicPhenotypesValueObject. # noqa: E501

Returns:: The all_id_of_phenotype of this BibliographicPhenotypesValueObject. # noqa: E501
Return type:: list[int]

attribute_map = {'all_id_of_phenotype': 'allIdOfPhenotype', 'evidence_id': 'evidenceId', 'gene_name': 'geneName', 'gene_ncbi': 'geneNCBI', 'phenotypes_values': 'phenotypesValues'}¶

property evidence_id¶

Gets the evidence_id of this BibliographicPhenotypesValueObject. # noqa: E501

Returns:: The evidence_id of this BibliographicPhenotypesValueObject. # noqa: E501
Return type:: int

property gene_name¶

Gets the gene_name of this BibliographicPhenotypesValueObject. # noqa: E501

Returns:: The gene_name of this BibliographicPhenotypesValueObject. # noqa: E501
Return type:: str

property gene_ncbi¶

Gets the gene_ncbi of this BibliographicPhenotypesValueObject. # noqa: E501

Returns:: The gene_ncbi of this BibliographicPhenotypesValueObject. # noqa: E501
Return type:: int

property phenotypes_values¶

Gets the phenotypes_values of this BibliographicPhenotypesValueObject. # noqa: E501

Returns:: The phenotypes_values of this BibliographicPhenotypesValueObject. # noqa: E501
Return type:: list[CharacteristicValueObject]

swagger_types = {'all_id_of_phenotype': 'list[int]', 'evidence_id': 'int', 'gene_name': 'str', 'gene_ncbi': 'int', 'phenotypes_values': 'list[CharacteristicValueObject]'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.BibliographicReferenceValueObject(id=None, abstract_text=None, author_list=None, citation=None, experiments=None, issue=None, pages=None, pub_accession=None, publication=None, publication_date=None, publisher=None, title=None, volume=None, mesh_terms=None, chemicals_terms=None, bibliographic_phenotypes=None, retracted=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

BibliographicReferenceValueObject - a model defined in Swagger

property abstract_text¶

Gets the abstract_text of this BibliographicReferenceValueObject. # noqa: E501

Returns:: The abstract_text of this BibliographicReferenceValueObject. # noqa: E501
Return type:: str

attribute_map = {'abstract_text': 'abstractText', 'author_list': 'authorList', 'bibliographic_phenotypes': 'bibliographicPhenotypes', 'chemicals_terms': 'chemicalsTerms', 'citation': 'citation', 'experiments': 'experiments', 'id': 'id', 'issue': 'issue', 'mesh_terms': 'meshTerms', 'pages': 'pages', 'pub_accession': 'pubAccession', 'publication': 'publication', 'publication_date': 'publicationDate', 'publisher': 'publisher', 'retracted': 'retracted', 'title': 'title', 'volume': 'volume'}¶

property author_list¶

Gets the author_list of this BibliographicReferenceValueObject. # noqa: E501

Returns:: The author_list of this BibliographicReferenceValueObject. # noqa: E501
Return type:: str

property bibliographic_phenotypes¶

Gets the bibliographic_phenotypes of this BibliographicReferenceValueObject. # noqa: E501

Returns:: The bibliographic_phenotypes of this BibliographicReferenceValueObject. # noqa: E501
Return type:: list[BibliographicPhenotypesValueObject]

property chemicals_terms¶

Gets the chemicals_terms of this BibliographicReferenceValueObject. # noqa: E501

Returns:: The chemicals_terms of this BibliographicReferenceValueObject. # noqa: E501
Return type:: list[str]

property citation¶

Gets the citation of this BibliographicReferenceValueObject. # noqa: E501

Returns:: The citation of this BibliographicReferenceValueObject. # noqa: E501
Return type:: CitationValueObject

property experiments¶

Gets the experiments of this BibliographicReferenceValueObject. # noqa: E501

Returns:: The experiments of this BibliographicReferenceValueObject. # noqa: E501
Return type:: list[ExpressionExperimentValueObject]

property id¶

Gets the id of this BibliographicReferenceValueObject. # noqa: E501

Returns:: The id of this BibliographicReferenceValueObject. # noqa: E501
Return type:: int

property issue¶

Gets the issue of this BibliographicReferenceValueObject. # noqa: E501

Returns:: The issue of this BibliographicReferenceValueObject. # noqa: E501
Return type:: str

property mesh_terms¶

Gets the mesh_terms of this BibliographicReferenceValueObject. # noqa: E501

Returns:: The mesh_terms of this BibliographicReferenceValueObject. # noqa: E501
Return type:: list[str]

property pages¶

Gets the pages of this BibliographicReferenceValueObject. # noqa: E501

Returns:: The pages of this BibliographicReferenceValueObject. # noqa: E501
Return type:: str

property pub_accession¶

Gets the pub_accession of this BibliographicReferenceValueObject. # noqa: E501

Returns:: The pub_accession of this BibliographicReferenceValueObject. # noqa: E501
Return type:: str

property publication¶

Gets the publication of this BibliographicReferenceValueObject. # noqa: E501

Returns:: The publication of this BibliographicReferenceValueObject. # noqa: E501
Return type:: str

property publication_date¶

Gets the publication_date of this BibliographicReferenceValueObject. # noqa: E501

Returns:: The publication_date of this BibliographicReferenceValueObject. # noqa: E501
Return type:: datetime

property publisher¶

Gets the publisher of this BibliographicReferenceValueObject. # noqa: E501

Returns:: The publisher of this BibliographicReferenceValueObject. # noqa: E501
Return type:: str

property retracted¶

Gets the retracted of this BibliographicReferenceValueObject. # noqa: E501

Returns:: The retracted of this BibliographicReferenceValueObject. # noqa: E501
Return type:: bool

swagger_types = {'abstract_text': 'str', 'author_list': 'str', 'bibliographic_phenotypes': 'list[BibliographicPhenotypesValueObject]', 'chemicals_terms': 'list[str]', 'citation': 'CitationValueObject', 'experiments': 'list[ExpressionExperimentValueObject]', 'id': 'int', 'issue': 'str', 'mesh_terms': 'list[str]', 'pages': 'str', 'pub_accession': 'str', 'publication': 'str', 'publication_date': 'datetime', 'publisher': 'str', 'retracted': 'bool', 'title': 'str', 'volume': 'str'}¶

property title¶

Gets the title of this BibliographicReferenceValueObject. # noqa: E501

Returns:: The title of this BibliographicReferenceValueObject. # noqa: E501
Return type:: str

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

property volume¶

Gets the volume of this BibliographicReferenceValueObject. # noqa: E501

Returns:: The volume of this BibliographicReferenceValueObject. # noqa: E501
Return type:: str

class gemmapy.sdk.models.BioAssayValueObject(id=None, accession=None, array_design=None, description=None, metadata=None, name=None, original_platform=None, outlier=None, predicted_outlier=None, processing_date=None, sample=None, sequence_paired_reads=None, sequence_read_count=None, sequence_read_length=None, user_flagged_outlier=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

BioAssayValueObject - a model defined in Swagger

property accession¶

Gets the accession of this BioAssayValueObject. # noqa: E501

Returns:: The accession of this BioAssayValueObject. # noqa: E501
Return type:: DatabaseEntryValueObject

property array_design¶

Gets the array_design of this BioAssayValueObject. # noqa: E501

Returns:: The array_design of this BioAssayValueObject. # noqa: E501
Return type:: ArrayDesignValueObject

attribute_map = {'accession': 'accession', 'array_design': 'arrayDesign', 'description': 'description', 'id': 'id', 'metadata': 'metadata', 'name': 'name', 'original_platform': 'originalPlatform', 'outlier': 'outlier', 'predicted_outlier': 'predictedOutlier', 'processing_date': 'processingDate', 'sample': 'sample', 'sequence_paired_reads': 'sequencePairedReads', 'sequence_read_count': 'sequenceReadCount', 'sequence_read_length': 'sequenceReadLength', 'user_flagged_outlier': 'userFlaggedOutlier'}¶

property description¶

Gets the description of this BioAssayValueObject. # noqa: E501

Returns:: The description of this BioAssayValueObject. # noqa: E501
Return type:: str

property id¶

Gets the id of this BioAssayValueObject. # noqa: E501

Returns:: The id of this BioAssayValueObject. # noqa: E501
Return type:: int

property metadata¶

Gets the metadata of this BioAssayValueObject. # noqa: E501

Returns:: The metadata of this BioAssayValueObject. # noqa: E501
Return type:: str

property name¶

Gets the name of this BioAssayValueObject. # noqa: E501

Returns:: The name of this BioAssayValueObject. # noqa: E501
Return type:: str

property original_platform¶

Gets the original_platform of this BioAssayValueObject. # noqa: E501

Returns:: The original_platform of this BioAssayValueObject. # noqa: E501
Return type:: ArrayDesignValueObject

property outlier¶

Gets the outlier of this BioAssayValueObject. # noqa: E501

Returns:: The outlier of this BioAssayValueObject. # noqa: E501
Return type:: bool

property predicted_outlier¶

Gets the predicted_outlier of this BioAssayValueObject. # noqa: E501

Returns:: The predicted_outlier of this BioAssayValueObject. # noqa: E501
Return type:: bool

property processing_date¶

Gets the processing_date of this BioAssayValueObject. # noqa: E501

Returns:: The processing_date of this BioAssayValueObject. # noqa: E501
Return type:: datetime

property sample¶

Gets the sample of this BioAssayValueObject. # noqa: E501

Returns:: The sample of this BioAssayValueObject. # noqa: E501
Return type:: BioMaterialValueObject

property sequence_paired_reads¶

Gets the sequence_paired_reads of this BioAssayValueObject. # noqa: E501

Returns:: The sequence_paired_reads of this BioAssayValueObject. # noqa: E501
Return type:: bool

property sequence_read_count¶

Gets the sequence_read_count of this BioAssayValueObject. # noqa: E501

Returns:: The sequence_read_count of this BioAssayValueObject. # noqa: E501
Return type:: int

property sequence_read_length¶

Gets the sequence_read_length of this BioAssayValueObject. # noqa: E501

Returns:: The sequence_read_length of this BioAssayValueObject. # noqa: E501
Return type:: int

swagger_types = {'accession': 'DatabaseEntryValueObject', 'array_design': 'ArrayDesignValueObject', 'description': 'str', 'id': 'int', 'metadata': 'str', 'name': 'str', 'original_platform': 'ArrayDesignValueObject', 'outlier': 'bool', 'predicted_outlier': 'bool', 'processing_date': 'datetime', 'sample': 'BioMaterialValueObject', 'sequence_paired_reads': 'bool', 'sequence_read_count': 'int', 'sequence_read_length': 'int', 'user_flagged_outlier': 'bool'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

property user_flagged_outlier¶

Gets the user_flagged_outlier of this BioAssayValueObject. # noqa: E501

Returns:: The user_flagged_outlier of this BioAssayValueObject. # noqa: E501
Return type:: bool

class gemmapy.sdk.models.BioMaterialValueObject(id=None, name=None, description=None, bio_assay_ids=None, characteristics=None, factors=None, factor_value_objects=None, factor_values=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

BioMaterialValueObject - a model defined in Swagger

attribute_map = {'bio_assay_ids': 'bioAssayIds', 'characteristics': 'characteristics', 'description': 'description', 'factor_value_objects': 'factorValueObjects', 'factor_values': 'factorValues', 'factors': 'factors', 'id': 'id', 'name': 'name'}¶

property bio_assay_ids¶

Gets the bio_assay_ids of this BioMaterialValueObject. # noqa: E501

Returns:: The bio_assay_ids of this BioMaterialValueObject. # noqa: E501
Return type:: list[int]

property characteristics¶

Gets the characteristics of this BioMaterialValueObject. # noqa: E501

Returns:: The characteristics of this BioMaterialValueObject. # noqa: E501
Return type:: list[CharacteristicValueObject]

property description¶

Gets the description of this BioMaterialValueObject. # noqa: E501

Returns:: The description of this BioMaterialValueObject. # noqa: E501
Return type:: str

property factor_value_objects¶

Gets the factor_value_objects of this BioMaterialValueObject. # noqa: E501

This property is redundant, use factorValues instead. # noqa: E501

Returns:: The factor_value_objects of this BioMaterialValueObject. # noqa: E501
Return type:: list[FactorValueBasicValueObject]

property factor_values¶

Gets the factor_values of this BioMaterialValueObject. # noqa: E501

Returns:: The factor_values of this BioMaterialValueObject. # noqa: E501
Return type:: list[FactorValueBasicValueObject]

property factors¶

Gets the factors of this BioMaterialValueObject. # noqa: E501

This is deprecated, use the factorValues collection instead. # noqa: E501

Returns:: The factors of this BioMaterialValueObject. # noqa: E501
Return type:: dict(str, str)

property id¶

Gets the id of this BioMaterialValueObject. # noqa: E501

Returns:: The id of this BioMaterialValueObject. # noqa: E501
Return type:: int

property name¶

Gets the name of this BioMaterialValueObject. # noqa: E501

Returns:: The name of this BioMaterialValueObject. # noqa: E501
Return type:: str

swagger_types = {'bio_assay_ids': 'list[int]', 'characteristics': 'list[CharacteristicValueObject]', 'description': 'str', 'factor_value_objects': 'list[FactorValueBasicValueObject]', 'factor_values': 'list[FactorValueBasicValueObject]', 'factors': 'dict(str, str)', 'id': 'int', 'name': 'str'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.BioSequenceValueObject(id=None, description=None, fraction_repeats=None, length=None, name=None, sequence=None, sequence_database_entry=None, taxon=None, type=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

BioSequenceValueObject - a model defined in Swagger

attribute_map = {'description': 'description', 'fraction_repeats': 'fractionRepeats', 'id': 'id', 'length': 'length', 'name': 'name', 'sequence': 'sequence', 'sequence_database_entry': 'sequenceDatabaseEntry', 'taxon': 'taxon', 'type': 'type'}¶

property description¶

Gets the description of this BioSequenceValueObject. # noqa: E501

Returns:: The description of this BioSequenceValueObject. # noqa: E501
Return type:: str

property fraction_repeats¶

Gets the fraction_repeats of this BioSequenceValueObject. # noqa: E501

Returns:: The fraction_repeats of this BioSequenceValueObject. # noqa: E501
Return type:: float

property id¶

Gets the id of this BioSequenceValueObject. # noqa: E501

Returns:: The id of this BioSequenceValueObject. # noqa: E501
Return type:: int

property length¶

Gets the length of this BioSequenceValueObject. # noqa: E501

Returns:: The length of this BioSequenceValueObject. # noqa: E501
Return type:: int

property name¶

Gets the name of this BioSequenceValueObject. # noqa: E501

Returns:: The name of this BioSequenceValueObject. # noqa: E501
Return type:: str

property sequence¶

Gets the sequence of this BioSequenceValueObject. # noqa: E501

Returns:: The sequence of this BioSequenceValueObject. # noqa: E501
Return type:: str

property sequence_database_entry¶

Gets the sequence_database_entry of this BioSequenceValueObject. # noqa: E501

Returns:: The sequence_database_entry of this BioSequenceValueObject. # noqa: E501
Return type:: DatabaseEntryValueObject

swagger_types = {'description': 'str', 'fraction_repeats': 'float', 'id': 'int', 'length': 'int', 'name': 'str', 'sequence': 'str', 'sequence_database_entry': 'DatabaseEntryValueObject', 'taxon': 'TaxonValueObject', 'type': 'str'}¶

property taxon¶

Gets the taxon of this BioSequenceValueObject. # noqa: E501

Returns:: The taxon of this BioSequenceValueObject. # noqa: E501
Return type:: TaxonValueObject

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

property type¶

Gets the type of this BioSequenceValueObject. # noqa: E501

Returns:: The type of this BioSequenceValueObject. # noqa: E501
Return type:: str

class gemmapy.sdk.models.CategoryWithUsageStatisticsValueObject(class_uri=None, class_name=None, number_of_expression_experiments=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

CategoryWithUsageStatisticsValueObject - a model defined in Swagger

attribute_map = {'class_name': 'className', 'class_uri': 'classUri', 'number_of_expression_experiments': 'numberOfExpressionExperiments'}¶

property class_name¶

Gets the class_name of this CategoryWithUsageStatisticsValueObject. # noqa: E501

Returns:: The class_name of this CategoryWithUsageStatisticsValueObject. # noqa: E501
Return type:: str

property class_uri¶

Gets the class_uri of this CategoryWithUsageStatisticsValueObject. # noqa: E501

Returns:: The class_uri of this CategoryWithUsageStatisticsValueObject. # noqa: E501
Return type:: str

property number_of_expression_experiments¶

Gets the number_of_expression_experiments of this CategoryWithUsageStatisticsValueObject. # noqa: E501

Returns:: The number_of_expression_experiments of this CategoryWithUsageStatisticsValueObject. # noqa: E501
Return type:: int

swagger_types = {'class_name': 'str', 'class_uri': 'str', 'number_of_expression_experiments': 'int'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.CharacteristicValueObject(id=None, category=None, category_uri=None, value=None, value_uri=None, value_id=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

CharacteristicValueObject - a model defined in Swagger

attribute_map = {'category': 'category', 'category_uri': 'categoryUri', 'id': 'id', 'value': 'value', 'value_id': 'valueId', 'value_uri': 'valueUri'}¶

property category¶

Gets the category of this CharacteristicValueObject. # noqa: E501

Returns:: The category of this CharacteristicValueObject. # noqa: E501
Return type:: str

property category_uri¶

Gets the category_uri of this CharacteristicValueObject. # noqa: E501

Returns:: The category_uri of this CharacteristicValueObject. # noqa: E501
Return type:: str

property id¶

Gets the id of this CharacteristicValueObject. # noqa: E501

Returns:: The id of this CharacteristicValueObject. # noqa: E501
Return type:: int

swagger_types = {'category': 'str', 'category_uri': 'str', 'id': 'int', 'value': 'str', 'value_id': 'str', 'value_uri': 'str'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

property value¶

Gets the value of this CharacteristicValueObject. # noqa: E501

Returns:: The value of this CharacteristicValueObject. # noqa: E501
Return type:: str

property value_id¶

Gets the value_id of this CharacteristicValueObject. # noqa: E501

Returns:: The value_id of this CharacteristicValueObject. # noqa: E501
Return type:: str

property value_uri¶

Gets the value_uri of this CharacteristicValueObject. # noqa: E501

Returns:: The value_uri of this CharacteristicValueObject. # noqa: E501
Return type:: str

class gemmapy.sdk.models.CitationValueObject(citation=None, id=None, pubmed_accession=None, pubmed_url=None, retracted=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

CitationValueObject - a model defined in Swagger

attribute_map = {'citation': 'citation', 'id': 'id', 'pubmed_accession': 'pubmedAccession', 'pubmed_url': 'pubmedURL', 'retracted': 'retracted'}¶

property citation¶

Gets the citation of this CitationValueObject. # noqa: E501

Returns:: The citation of this CitationValueObject. # noqa: E501
Return type:: str

property id¶

Gets the id of this CitationValueObject. # noqa: E501

Returns:: The id of this CitationValueObject. # noqa: E501
Return type:: int

property pubmed_accession¶

Gets the pubmed_accession of this CitationValueObject. # noqa: E501

Returns:: The pubmed_accession of this CitationValueObject. # noqa: E501
Return type:: str

property pubmed_url¶

Gets the pubmed_url of this CitationValueObject. # noqa: E501

Returns:: The pubmed_url of this CitationValueObject. # noqa: E501
Return type:: str

property retracted¶

Gets the retracted of this CitationValueObject. # noqa: E501

Returns:: The retracted of this CitationValueObject. # noqa: E501
Return type:: bool

swagger_types = {'citation': 'str', 'id': 'int', 'pubmed_accession': 'str', 'pubmed_url': 'str', 'retracted': 'bool'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.CompositeSequenceArg[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

CompositeSequenceArg - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.CompositeSequenceValueObject(id=None, name=None, description=None, array_design=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

CompositeSequenceValueObject - a model defined in Swagger

property array_design¶

Gets the array_design of this CompositeSequenceValueObject. # noqa: E501

Returns:: The array_design of this CompositeSequenceValueObject. # noqa: E501
Return type:: ArrayDesignValueObject

attribute_map = {'array_design': 'arrayDesign', 'description': 'description', 'id': 'id', 'name': 'name'}¶

property description¶

Gets the description of this CompositeSequenceValueObject. # noqa: E501

Returns:: The description of this CompositeSequenceValueObject. # noqa: E501
Return type:: str

property id¶

Gets the id of this CompositeSequenceValueObject. # noqa: E501

Returns:: The id of this CompositeSequenceValueObject. # noqa: E501
Return type:: int

property name¶

Gets the name of this CompositeSequenceValueObject. # noqa: E501

Returns:: The name of this CompositeSequenceValueObject. # noqa: E501
Return type:: str

swagger_types = {'array_design': 'ArrayDesignValueObject', 'description': 'str', 'id': 'int', 'name': 'str'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.ContrastResultValueObject(id=None, pvalue=None, coefficient=None, log_fold_change=None, factor_value=None, second_factor_value=None, tstat=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

ContrastResultValueObject - a model defined in Swagger

attribute_map = {'coefficient': 'coefficient', 'factor_value': 'factorValue', 'id': 'id', 'log_fold_change': 'logFoldChange', 'pvalue': 'pvalue', 'second_factor_value': 'secondFactorValue', 'tstat': 'tstat'}¶

property coefficient¶

Gets the coefficient of this ContrastResultValueObject. # noqa: E501

Returns:: The coefficient of this ContrastResultValueObject. # noqa: E501
Return type:: float

property factor_value¶

Gets the factor_value of this ContrastResultValueObject. # noqa: E501

Returns:: The factor_value of this ContrastResultValueObject. # noqa: E501
Return type:: FactorValueBasicValueObject

property id¶

Gets the id of this ContrastResultValueObject. # noqa: E501

Returns:: The id of this ContrastResultValueObject. # noqa: E501
Return type:: int

property log_fold_change¶

Gets the log_fold_change of this ContrastResultValueObject. # noqa: E501

Returns:: The log_fold_change of this ContrastResultValueObject. # noqa: E501
Return type:: float

property pvalue¶

Gets the pvalue of this ContrastResultValueObject. # noqa: E501

Returns:: The pvalue of this ContrastResultValueObject. # noqa: E501
Return type:: float

property second_factor_value¶

Gets the second_factor_value of this ContrastResultValueObject. # noqa: E501

Returns:: The second_factor_value of this ContrastResultValueObject. # noqa: E501
Return type:: FactorValueBasicValueObject

swagger_types = {'coefficient': 'float', 'factor_value': 'FactorValueBasicValueObject', 'id': 'int', 'log_fold_change': 'float', 'pvalue': 'float', 'second_factor_value': 'FactorValueBasicValueObject', 'tstat': 'float'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

property tstat¶

Gets the tstat of this ContrastResultValueObject. # noqa: E501

Returns:: The tstat of this ContrastResultValueObject. # noqa: E501
Return type:: float

class gemmapy.sdk.models.DatabaseEntryArg[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

DatabaseEntryArg - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.DatabaseEntryValueObject(id=None, accession=None, external_database=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

DatabaseEntryValueObject - a model defined in Swagger

property accession¶

Gets the accession of this DatabaseEntryValueObject. # noqa: E501

Returns:: The accession of this DatabaseEntryValueObject. # noqa: E501
Return type:: str

attribute_map = {'accession': 'accession', 'external_database': 'externalDatabase', 'id': 'id'}¶

property external_database¶

Gets the external_database of this DatabaseEntryValueObject. # noqa: E501

Returns:: The external_database of this DatabaseEntryValueObject. # noqa: E501
Return type:: ExternalDatabaseValueObject

property id¶

Gets the id of this DatabaseEntryValueObject. # noqa: E501

Returns:: The id of this DatabaseEntryValueObject. # noqa: E501
Return type:: int

swagger_types = {'accession': 'str', 'external_database': 'ExternalDatabaseValueObject', 'id': 'int'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.Dataset[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

Dataset - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.Dataset1[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

Dataset1 - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.Dataset10[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

Dataset10 - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.Dataset2[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

Dataset2 - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.Dataset3[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

Dataset3 - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.Dataset4[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

Dataset4 - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.Dataset5[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

Dataset5 - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.Dataset6[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

Dataset6 - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.Dataset7[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

Dataset7 - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.Dataset8[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

Dataset8 - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.Dataset9[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

Dataset9 - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.DatasetArg[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

DatasetArg - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.DiffExResultSetSummaryValueObject(id=None, array_designs_used=None, baseline_group=None, experimental_factors=None, number_of_genes_analyzed=None, number_of_probes_analyzed=None, threshold=None, number_of_diff_expressed_probes=None, upregulated_count=None, downregulated_count=None, number_of_upregulated_probes=None, number_of_downregulated_probes=None, qvalue=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

DiffExResultSetSummaryValueObject - a model defined in Swagger

property array_designs_used¶

Gets the array_designs_used of this DiffExResultSetSummaryValueObject. # noqa: E501

Returns:: The array_designs_used of this DiffExResultSetSummaryValueObject. # noqa: E501
Return type:: list[int]

attribute_map = {'array_designs_used': 'arrayDesignsUsed', 'baseline_group': 'baselineGroup', 'downregulated_count': 'downregulatedCount', 'experimental_factors': 'experimentalFactors', 'id': 'id', 'number_of_diff_expressed_probes': 'numberOfDiffExpressedProbes', 'number_of_downregulated_probes': 'numberOfDownregulatedProbes', 'number_of_genes_analyzed': 'numberOfGenesAnalyzed', 'number_of_probes_analyzed': 'numberOfProbesAnalyzed', 'number_of_upregulated_probes': 'numberOfUpregulatedProbes', 'qvalue': 'qvalue', 'threshold': 'threshold', 'upregulated_count': 'upregulatedCount'}¶

property baseline_group¶

Gets the baseline_group of this DiffExResultSetSummaryValueObject. # noqa: E501

Returns:: The baseline_group of this DiffExResultSetSummaryValueObject. # noqa: E501
Return type:: FactorValueValueObject

property downregulated_count¶

Gets the downregulated_count of this DiffExResultSetSummaryValueObject. # noqa: E501

Returns:: The downregulated_count of this DiffExResultSetSummaryValueObject. # noqa: E501
Return type:: int

property experimental_factors¶

Gets the experimental_factors of this DiffExResultSetSummaryValueObject. # noqa: E501

Returns:: The experimental_factors of this DiffExResultSetSummaryValueObject. # noqa: E501
Return type:: list[ExperimentalFactorValueObject]

property id¶

Gets the id of this DiffExResultSetSummaryValueObject. # noqa: E501

Returns:: The id of this DiffExResultSetSummaryValueObject. # noqa: E501
Return type:: int

property number_of_diff_expressed_probes¶

Gets the number_of_diff_expressed_probes of this DiffExResultSetSummaryValueObject. # noqa: E501

Returns:: The number_of_diff_expressed_probes of this DiffExResultSetSummaryValueObject. # noqa: E501
Return type:: int

property number_of_downregulated_probes¶

Gets the number_of_downregulated_probes of this DiffExResultSetSummaryValueObject. # noqa: E501

Returns:: The number_of_downregulated_probes of this DiffExResultSetSummaryValueObject. # noqa: E501
Return type:: int

property number_of_genes_analyzed¶

Gets the number_of_genes_analyzed of this DiffExResultSetSummaryValueObject. # noqa: E501

Returns:: The number_of_genes_analyzed of this DiffExResultSetSummaryValueObject. # noqa: E501
Return type:: int

property number_of_probes_analyzed¶

Gets the number_of_probes_analyzed of this DiffExResultSetSummaryValueObject. # noqa: E501

Returns:: The number_of_probes_analyzed of this DiffExResultSetSummaryValueObject. # noqa: E501
Return type:: int

property number_of_upregulated_probes¶

Gets the number_of_upregulated_probes of this DiffExResultSetSummaryValueObject. # noqa: E501

Returns:: The number_of_upregulated_probes of this DiffExResultSetSummaryValueObject. # noqa: E501
Return type:: int

property qvalue¶

Gets the qvalue of this DiffExResultSetSummaryValueObject. # noqa: E501

Returns:: The qvalue of this DiffExResultSetSummaryValueObject. # noqa: E501
Return type:: float

swagger_types = {'array_designs_used': 'list[int]', 'baseline_group': 'FactorValueValueObject', 'downregulated_count': 'int', 'experimental_factors': 'list[ExperimentalFactorValueObject]', 'id': 'int', 'number_of_diff_expressed_probes': 'int', 'number_of_downregulated_probes': 'int', 'number_of_genes_analyzed': 'int', 'number_of_probes_analyzed': 'int', 'number_of_upregulated_probes': 'int', 'qvalue': 'float', 'threshold': 'float', 'upregulated_count': 'int'}¶

property threshold¶

Gets the threshold of this DiffExResultSetSummaryValueObject. # noqa: E501

Returns:: The threshold of this DiffExResultSetSummaryValueObject. # noqa: E501
Return type:: float

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

property upregulated_count¶

Gets the upregulated_count of this DiffExResultSetSummaryValueObject. # noqa: E501

Returns:: The upregulated_count of this DiffExResultSetSummaryValueObject. # noqa: E501
Return type:: int

class gemmapy.sdk.models.DifferentialExpressionAnalysisResultSetValueObject(id=None, analysis=None, experimental_factors=None, baseline_group=None, results=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

DifferentialExpressionAnalysisResultSetValueObject - a model defined in Swagger

property analysis¶

Gets the analysis of this DifferentialExpressionAnalysisResultSetValueObject. # noqa: E501

Returns:: The analysis of this DifferentialExpressionAnalysisResultSetValueObject. # noqa: E501
Return type:: DifferentialExpressionAnalysisValueObject

attribute_map = {'analysis': 'analysis', 'baseline_group': 'baselineGroup', 'experimental_factors': 'experimentalFactors', 'id': 'id', 'results': 'results'}¶

property baseline_group¶

Gets the baseline_group of this DifferentialExpressionAnalysisResultSetValueObject. # noqa: E501

Returns:: The baseline_group of this DifferentialExpressionAnalysisResultSetValueObject. # noqa: E501
Return type:: FactorValueBasicValueObject

property experimental_factors¶

Gets the experimental_factors of this DifferentialExpressionAnalysisResultSetValueObject. # noqa: E501

Returns:: The experimental_factors of this DifferentialExpressionAnalysisResultSetValueObject. # noqa: E501
Return type:: list[ExperimentalFactorValueObject]

property id¶

Gets the id of this DifferentialExpressionAnalysisResultSetValueObject. # noqa: E501

Returns:: The id of this DifferentialExpressionAnalysisResultSetValueObject. # noqa: E501
Return type:: int

property results¶

Gets the results of this DifferentialExpressionAnalysisResultSetValueObject. # noqa: E501

Returns:: The results of this DifferentialExpressionAnalysisResultSetValueObject. # noqa: E501
Return type:: list[DifferentialExpressionAnalysisResultValueObject]

swagger_types = {'analysis': 'DifferentialExpressionAnalysisValueObject', 'baseline_group': 'FactorValueBasicValueObject', 'experimental_factors': 'list[ExperimentalFactorValueObject]', 'id': 'int', 'results': 'list[DifferentialExpressionAnalysisResultValueObject]'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.DifferentialExpressionAnalysisResultValueObject(id=None, probe_id=None, probe_name=None, genes=None, corrected_pvalue=None, rank=None, contrasts=None, pvalue=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

DifferentialExpressionAnalysisResultValueObject - a model defined in Swagger

attribute_map = {'contrasts': 'contrasts', 'corrected_pvalue': 'correctedPvalue', 'genes': 'genes', 'id': 'id', 'probe_id': 'probeId', 'probe_name': 'probeName', 'pvalue': 'pvalue', 'rank': 'rank'}¶

property contrasts¶

Gets the contrasts of this DifferentialExpressionAnalysisResultValueObject. # noqa: E501

Returns:: The contrasts of this DifferentialExpressionAnalysisResultValueObject. # noqa: E501
Return type:: list[ContrastResultValueObject]

property corrected_pvalue¶

Gets the corrected_pvalue of this DifferentialExpressionAnalysisResultValueObject. # noqa: E501

Returns:: The corrected_pvalue of this DifferentialExpressionAnalysisResultValueObject. # noqa: E501
Return type:: float

property genes¶

Gets the genes of this DifferentialExpressionAnalysisResultValueObject. # noqa: E501

Returns:: The genes of this DifferentialExpressionAnalysisResultValueObject. # noqa: E501
Return type:: list[GeneValueObject]

property id¶

Gets the id of this DifferentialExpressionAnalysisResultValueObject. # noqa: E501

Returns:: The id of this DifferentialExpressionAnalysisResultValueObject. # noqa: E501
Return type:: int

property probe_id¶

Gets the probe_id of this DifferentialExpressionAnalysisResultValueObject. # noqa: E501

Returns:: The probe_id of this DifferentialExpressionAnalysisResultValueObject. # noqa: E501
Return type:: int

property probe_name¶

Gets the probe_name of this DifferentialExpressionAnalysisResultValueObject. # noqa: E501

Returns:: The probe_name of this DifferentialExpressionAnalysisResultValueObject. # noqa: E501
Return type:: str

property pvalue¶

Gets the pvalue of this DifferentialExpressionAnalysisResultValueObject. # noqa: E501

Returns:: The pvalue of this DifferentialExpressionAnalysisResultValueObject. # noqa: E501
Return type:: float

property rank¶

Gets the rank of this DifferentialExpressionAnalysisResultValueObject. # noqa: E501

Returns:: The rank of this DifferentialExpressionAnalysisResultValueObject. # noqa: E501
Return type:: float

swagger_types = {'contrasts': 'list[ContrastResultValueObject]', 'corrected_pvalue': 'float', 'genes': 'list[GeneValueObject]', 'id': 'int', 'probe_id': 'int', 'probe_name': 'str', 'pvalue': 'float', 'rank': 'float'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.DifferentialExpressionAnalysisValueObject(id=None, factor_values_used=None, result_sets=None, array_designs_used=None, bio_assay_set_id=None, source_experiment=None, subset_factor=None, subset_factor_id=None, subset_factor_value=None, factor_values_used_by_experimental_factor_id=None, is_subset=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

DifferentialExpressionAnalysisValueObject - a model defined in Swagger

property array_designs_used¶

Gets the array_designs_used of this DifferentialExpressionAnalysisValueObject. # noqa: E501

Returns:: The array_designs_used of this DifferentialExpressionAnalysisValueObject. # noqa: E501
Return type:: list[int]

attribute_map = {'array_designs_used': 'arrayDesignsUsed', 'bio_assay_set_id': 'bioAssaySetId', 'factor_values_used': 'factorValuesUsed', 'factor_values_used_by_experimental_factor_id': 'factorValuesUsedByExperimentalFactorId', 'id': 'id', 'is_subset': 'isSubset', 'result_sets': 'resultSets', 'source_experiment': 'sourceExperiment', 'subset_factor': 'subsetFactor', 'subset_factor_id': 'subsetFactorId', 'subset_factor_value': 'subsetFactorValue'}¶

property bio_assay_set_id¶

Gets the bio_assay_set_id of this DifferentialExpressionAnalysisValueObject. # noqa: E501

Returns:: The bio_assay_set_id of this DifferentialExpressionAnalysisValueObject. # noqa: E501
Return type:: int

property factor_values_used¶

Gets the factor_values_used of this DifferentialExpressionAnalysisValueObject. # noqa: E501

Returns:: The factor_values_used of this DifferentialExpressionAnalysisValueObject. # noqa: E501
Return type:: dict(str, list[FactorValueValueObject])

property factor_values_used_by_experimental_factor_id¶

Gets the factor_values_used_by_experimental_factor_id of this DifferentialExpressionAnalysisValueObject. # noqa: E501

Returns:: The factor_values_used_by_experimental_factor_id of this DifferentialExpressionAnalysisValueObject. # noqa: E501
Return type:: dict(str, list[FactorValueValueObject])

property id¶

Gets the id of this DifferentialExpressionAnalysisValueObject. # noqa: E501

Returns:: The id of this DifferentialExpressionAnalysisValueObject. # noqa: E501
Return type:: int

property is_subset¶

Gets the is_subset of this DifferentialExpressionAnalysisValueObject. # noqa: E501

Returns:: The is_subset of this DifferentialExpressionAnalysisValueObject. # noqa: E501
Return type:: bool

property result_sets¶

Gets the result_sets of this DifferentialExpressionAnalysisValueObject. # noqa: E501

Returns:: The result_sets of this DifferentialExpressionAnalysisValueObject. # noqa: E501
Return type:: list[DiffExResultSetSummaryValueObject]

property source_experiment¶

Gets the source_experiment of this DifferentialExpressionAnalysisValueObject. # noqa: E501

Returns:: The source_experiment of this DifferentialExpressionAnalysisValueObject. # noqa: E501
Return type:: int

property subset_factor¶

Gets the subset_factor of this DifferentialExpressionAnalysisValueObject. # noqa: E501

Returns:: The subset_factor of this DifferentialExpressionAnalysisValueObject. # noqa: E501
Return type:: ExperimentalFactorValueObject

property subset_factor_id¶

Gets the subset_factor_id of this DifferentialExpressionAnalysisValueObject. # noqa: E501

Returns:: The subset_factor_id of this DifferentialExpressionAnalysisValueObject. # noqa: E501
Return type:: int

property subset_factor_value¶

Gets the subset_factor_value of this DifferentialExpressionAnalysisValueObject. # noqa: E501

Returns:: The subset_factor_value of this DifferentialExpressionAnalysisValueObject. # noqa: E501
Return type:: FactorValueValueObject

swagger_types = {'array_designs_used': 'list[int]', 'bio_assay_set_id': 'int', 'factor_values_used': 'dict(str, list[FactorValueValueObject])', 'factor_values_used_by_experimental_factor_id': 'dict(str, list[FactorValueValueObject])', 'id': 'int', 'is_subset': 'bool', 'result_sets': 'list[DiffExResultSetSummaryValueObject]', 'source_experiment': 'int', 'subset_factor': 'ExperimentalFactorValueObject', 'subset_factor_id': 'int', 'subset_factor_value': 'FactorValueValueObject'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.ExperimentExpressionLevelsValueObject(dataset_id=None, gene_expression_levels=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

ExperimentExpressionLevelsValueObject - a model defined in Swagger

attribute_map = {'dataset_id': 'datasetId', 'gene_expression_levels': 'geneExpressionLevels'}¶

property dataset_id¶

Gets the dataset_id of this ExperimentExpressionLevelsValueObject. # noqa: E501

Returns:: The dataset_id of this ExperimentExpressionLevelsValueObject. # noqa: E501
Return type:: int

property gene_expression_levels¶

Gets the gene_expression_levels of this ExperimentExpressionLevelsValueObject. # noqa: E501

Returns:: The gene_expression_levels of this ExperimentExpressionLevelsValueObject. # noqa: E501
Return type:: list[GeneElementExpressionsValueObject]

swagger_types = {'dataset_id': 'int', 'gene_expression_levels': 'list[GeneElementExpressionsValueObject]'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.ExperimentalFactorValueObject(id=None, category=None, category_uri=None, description=None, factor_values=None, name=None, type=None, values=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

ExperimentalFactorValueObject - a model defined in Swagger

attribute_map = {'category': 'category', 'category_uri': 'categoryUri', 'description': 'description', 'factor_values': 'factorValues', 'id': 'id', 'name': 'name', 'type': 'type', 'values': 'values'}¶

property category¶

Gets the category of this ExperimentalFactorValueObject. # noqa: E501

Returns:: The category of this ExperimentalFactorValueObject. # noqa: E501
Return type:: str

property category_uri¶

Gets the category_uri of this ExperimentalFactorValueObject. # noqa: E501

Returns:: The category_uri of this ExperimentalFactorValueObject. # noqa: E501
Return type:: str

property description¶

Gets the description of this ExperimentalFactorValueObject. # noqa: E501

Returns:: The description of this ExperimentalFactorValueObject. # noqa: E501
Return type:: str

property factor_values¶

Gets the factor_values of this ExperimentalFactorValueObject. # noqa: E501

This is deprecated, use values directly instead. # noqa: E501

Returns:: The factor_values of this ExperimentalFactorValueObject. # noqa: E501
Return type:: str

property id¶

Gets the id of this ExperimentalFactorValueObject. # noqa: E501

Returns:: The id of this ExperimentalFactorValueObject. # noqa: E501
Return type:: int

property name¶

Gets the name of this ExperimentalFactorValueObject. # noqa: E501

Returns:: The name of this ExperimentalFactorValueObject. # noqa: E501
Return type:: str

swagger_types = {'category': 'str', 'category_uri': 'str', 'description': 'str', 'factor_values': 'str', 'id': 'int', 'name': 'str', 'type': 'str', 'values': 'list[FactorValueValueObject]'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

property type¶

Gets the type of this ExperimentalFactorValueObject. # noqa: E501

Returns:: The type of this ExperimentalFactorValueObject. # noqa: E501
Return type:: str

property values¶

Gets the values of this ExperimentalFactorValueObject. # noqa: E501

Returns:: The values of this ExperimentalFactorValueObject. # noqa: E501
Return type:: list[FactorValueValueObject]

class gemmapy.sdk.models.ExpressionExperimentSetValueObject(id=None, description=None, expression_experiment_ids=None, is_public=None, modifiable=None, name=None, size=None, num_with_coexpression_analysis=None, num_with_differential_expression_analysis=None, taxon_id=None, taxon_name=None, user_can_write=None, user_owned=None, is_shared=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

ExpressionExperimentSetValueObject - a model defined in Swagger

attribute_map = {'description': 'description', 'expression_experiment_ids': 'expressionExperimentIds', 'id': 'id', 'is_public': 'isPublic', 'is_shared': 'isShared', 'modifiable': 'modifiable', 'name': 'name', 'num_with_coexpression_analysis': 'numWithCoexpressionAnalysis', 'num_with_differential_expression_analysis': 'numWithDifferentialExpressionAnalysis', 'size': 'size', 'taxon_id': 'taxonId', 'taxon_name': 'taxonName', 'user_can_write': 'userCanWrite', 'user_owned': 'userOwned'}¶

property description¶

Gets the description of this ExpressionExperimentSetValueObject. # noqa: E501

Returns:: The description of this ExpressionExperimentSetValueObject. # noqa: E501
Return type:: str

property expression_experiment_ids¶

Gets the expression_experiment_ids of this ExpressionExperimentSetValueObject. # noqa: E501

Returns:: The expression_experiment_ids of this ExpressionExperimentSetValueObject. # noqa: E501
Return type:: list[int]

property id¶

Gets the id of this ExpressionExperimentSetValueObject. # noqa: E501

Returns:: The id of this ExpressionExperimentSetValueObject. # noqa: E501
Return type:: int

property is_public¶

Gets the is_public of this ExpressionExperimentSetValueObject. # noqa: E501

Returns:: The is_public of this ExpressionExperimentSetValueObject. # noqa: E501
Return type:: bool

property is_shared¶

Gets the is_shared of this ExpressionExperimentSetValueObject. # noqa: E501

Returns:: The is_shared of this ExpressionExperimentSetValueObject. # noqa: E501
Return type:: bool

property modifiable¶

Gets the modifiable of this ExpressionExperimentSetValueObject. # noqa: E501

Returns:: The modifiable of this ExpressionExperimentSetValueObject. # noqa: E501
Return type:: bool

property name¶

Gets the name of this ExpressionExperimentSetValueObject. # noqa: E501

Returns:: The name of this ExpressionExperimentSetValueObject. # noqa: E501
Return type:: str

property num_with_coexpression_analysis¶

Gets the num_with_coexpression_analysis of this ExpressionExperimentSetValueObject. # noqa: E501

Returns:: The num_with_coexpression_analysis of this ExpressionExperimentSetValueObject. # noqa: E501
Return type:: int

property num_with_differential_expression_analysis¶

Gets the num_with_differential_expression_analysis of this ExpressionExperimentSetValueObject. # noqa: E501

Returns:: The num_with_differential_expression_analysis of this ExpressionExperimentSetValueObject. # noqa: E501
Return type:: int

property size¶

Gets the size of this ExpressionExperimentSetValueObject. # noqa: E501

Returns:: The size of this ExpressionExperimentSetValueObject. # noqa: E501
Return type:: int

swagger_types = {'description': 'str', 'expression_experiment_ids': 'list[int]', 'id': 'int', 'is_public': 'bool', 'is_shared': 'bool', 'modifiable': 'bool', 'name': 'str', 'num_with_coexpression_analysis': 'int', 'num_with_differential_expression_analysis': 'int', 'size': 'int', 'taxon_id': 'int', 'taxon_name': 'str', 'user_can_write': 'bool', 'user_owned': 'bool'}¶

property taxon_id¶

Gets the taxon_id of this ExpressionExperimentSetValueObject. # noqa: E501

Returns:: The taxon_id of this ExpressionExperimentSetValueObject. # noqa: E501
Return type:: int

property taxon_name¶

Gets the taxon_name of this ExpressionExperimentSetValueObject. # noqa: E501

Returns:: The taxon_name of this ExpressionExperimentSetValueObject. # noqa: E501
Return type:: str

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

property user_can_write¶

Gets the user_can_write of this ExpressionExperimentSetValueObject. # noqa: E501

Returns:: The user_can_write of this ExpressionExperimentSetValueObject. # noqa: E501
Return type:: bool

property user_owned¶

Gets the user_owned of this ExpressionExperimentSetValueObject. # noqa: E501

Returns:: The user_owned of this ExpressionExperimentSetValueObject. # noqa: E501
Return type:: bool

class gemmapy.sdk.models.ExpressionExperimentValueObject(id=None, last_updated=None, troubled=None, last_troubled_event=None, needs_attention=None, last_needs_attention_event=None, curation_note=None, last_note_update_event=None, number_of_bio_assays=None, description=None, name=None, accession=None, batch_confound=None, batch_effect=None, batch_effect_statistics=None, external_database=None, external_database_uri=None, external_uri=None, geeq=None, metadata=None, short_name=None, source=None, technology_type=None, taxon_id=None, bio_assay_count=None, trouble_details=None, number_of_array_designs=None, number_of_processed_expression_vectors=None, taxon=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

ExpressionExperimentValueObject - a model defined in Swagger

property accession¶

Gets the accession of this ExpressionExperimentValueObject. # noqa: E501

Returns:: The accession of this ExpressionExperimentValueObject. # noqa: E501
Return type:: str

attribute_map = {'accession': 'accession', 'batch_confound': 'batchConfound', 'batch_effect': 'batchEffect', 'batch_effect_statistics': 'batchEffectStatistics', 'bio_assay_count': 'bioAssayCount', 'curation_note': 'curationNote', 'description': 'description', 'external_database': 'externalDatabase', 'external_database_uri': 'externalDatabaseUri', 'external_uri': 'externalUri', 'geeq': 'geeq', 'id': 'id', 'last_needs_attention_event': 'lastNeedsAttentionEvent', 'last_note_update_event': 'lastNoteUpdateEvent', 'last_troubled_event': 'lastTroubledEvent', 'last_updated': 'lastUpdated', 'metadata': 'metadata', 'name': 'name', 'needs_attention': 'needsAttention', 'number_of_array_designs': 'numberOfArrayDesigns', 'number_of_bio_assays': 'numberOfBioAssays', 'number_of_processed_expression_vectors': 'numberOfProcessedExpressionVectors', 'short_name': 'shortName', 'source': 'source', 'taxon': 'taxon', 'taxon_id': 'taxonId', 'technology_type': 'technologyType', 'trouble_details': 'troubleDetails', 'troubled': 'troubled'}¶

property batch_confound¶

Gets the batch_confound of this ExpressionExperimentValueObject. # noqa: E501

Returns:: The batch_confound of this ExpressionExperimentValueObject. # noqa: E501
Return type:: str

property batch_effect¶

Gets the batch_effect of this ExpressionExperimentValueObject. # noqa: E501

Returns:: The batch_effect of this ExpressionExperimentValueObject. # noqa: E501
Return type:: str

property batch_effect_statistics¶

Gets the batch_effect_statistics of this ExpressionExperimentValueObject. # noqa: E501

Returns:: The batch_effect_statistics of this ExpressionExperimentValueObject. # noqa: E501
Return type:: str

property bio_assay_count¶

Gets the bio_assay_count of this ExpressionExperimentValueObject. # noqa: E501

Returns:: The bio_assay_count of this ExpressionExperimentValueObject. # noqa: E501
Return type:: int

property curation_note¶

Gets the curation_note of this ExpressionExperimentValueObject. # noqa: E501

Returns:: The curation_note of this ExpressionExperimentValueObject. # noqa: E501
Return type:: str

property description¶

Gets the description of this ExpressionExperimentValueObject. # noqa: E501

Returns:: The description of this ExpressionExperimentValueObject. # noqa: E501
Return type:: str

property external_database¶

Gets the external_database of this ExpressionExperimentValueObject. # noqa: E501

Returns:: The external_database of this ExpressionExperimentValueObject. # noqa: E501
Return type:: str

property external_database_uri¶

Gets the external_database_uri of this ExpressionExperimentValueObject. # noqa: E501

Returns:: The external_database_uri of this ExpressionExperimentValueObject. # noqa: E501
Return type:: str

property external_uri¶

Gets the external_uri of this ExpressionExperimentValueObject. # noqa: E501

Returns:: The external_uri of this ExpressionExperimentValueObject. # noqa: E501
Return type:: str

property geeq¶

Gets the geeq of this ExpressionExperimentValueObject. # noqa: E501

Returns:: The geeq of this ExpressionExperimentValueObject. # noqa: E501
Return type:: GeeqValueObject

property id¶

Gets the id of this ExpressionExperimentValueObject. # noqa: E501

Returns:: The id of this ExpressionExperimentValueObject. # noqa: E501
Return type:: int

property last_needs_attention_event¶

Gets the last_needs_attention_event of this ExpressionExperimentValueObject. # noqa: E501

Returns:: The last_needs_attention_event of this ExpressionExperimentValueObject. # noqa: E501
Return type:: AuditEventValueObject

property last_note_update_event¶

Gets the last_note_update_event of this ExpressionExperimentValueObject. # noqa: E501

Returns:: The last_note_update_event of this ExpressionExperimentValueObject. # noqa: E501
Return type:: AuditEventValueObject

property last_troubled_event¶

Gets the last_troubled_event of this ExpressionExperimentValueObject. # noqa: E501

Returns:: The last_troubled_event of this ExpressionExperimentValueObject. # noqa: E501
Return type:: AuditEventValueObject

property last_updated¶

Gets the last_updated of this ExpressionExperimentValueObject. # noqa: E501

Returns:: The last_updated of this ExpressionExperimentValueObject. # noqa: E501
Return type:: datetime

property metadata¶

Gets the metadata of this ExpressionExperimentValueObject. # noqa: E501

Returns:: The metadata of this ExpressionExperimentValueObject. # noqa: E501
Return type:: str

property name¶

Gets the name of this ExpressionExperimentValueObject. # noqa: E501

Returns:: The name of this ExpressionExperimentValueObject. # noqa: E501
Return type:: str

property needs_attention¶

Gets the needs_attention of this ExpressionExperimentValueObject. # noqa: E501

Returns:: The needs_attention of this ExpressionExperimentValueObject. # noqa: E501
Return type:: bool

property number_of_array_designs¶

Gets the number_of_array_designs of this ExpressionExperimentValueObject. # noqa: E501

Returns:: The number_of_array_designs of this ExpressionExperimentValueObject. # noqa: E501
Return type:: int

property number_of_bio_assays¶

Gets the number_of_bio_assays of this ExpressionExperimentValueObject. # noqa: E501

Returns:: The number_of_bio_assays of this ExpressionExperimentValueObject. # noqa: E501
Return type:: int

property number_of_processed_expression_vectors¶

Gets the number_of_processed_expression_vectors of this ExpressionExperimentValueObject. # noqa: E501

Returns:: The number_of_processed_expression_vectors of this ExpressionExperimentValueObject. # noqa: E501
Return type:: int

property short_name¶

Gets the short_name of this ExpressionExperimentValueObject. # noqa: E501

Returns:: The short_name of this ExpressionExperimentValueObject. # noqa: E501
Return type:: str

property source¶

Gets the source of this ExpressionExperimentValueObject. # noqa: E501

Returns:: The source of this ExpressionExperimentValueObject. # noqa: E501
Return type:: str

swagger_types = {'accession': 'str', 'batch_confound': 'str', 'batch_effect': 'str', 'batch_effect_statistics': 'str', 'bio_assay_count': 'int', 'curation_note': 'str', 'description': 'str', 'external_database': 'str', 'external_database_uri': 'str', 'external_uri': 'str', 'geeq': 'GeeqValueObject', 'id': 'int', 'last_needs_attention_event': 'AuditEventValueObject', 'last_note_update_event': 'AuditEventValueObject', 'last_troubled_event': 'AuditEventValueObject', 'last_updated': 'datetime', 'metadata': 'str', 'name': 'str', 'needs_attention': 'bool', 'number_of_array_designs': 'int', 'number_of_bio_assays': 'int', 'number_of_processed_expression_vectors': 'int', 'short_name': 'str', 'source': 'str', 'taxon': 'TaxonValueObject', 'taxon_id': 'int', 'technology_type': 'str', 'trouble_details': 'str', 'troubled': 'bool'}¶

property taxon¶

Gets the taxon of this ExpressionExperimentValueObject. # noqa: E501

Returns:: The taxon of this ExpressionExperimentValueObject. # noqa: E501
Return type:: TaxonValueObject

property taxon_id¶

Gets the taxon_id of this ExpressionExperimentValueObject. # noqa: E501

Returns:: The taxon_id of this ExpressionExperimentValueObject. # noqa: E501
Return type:: int

property technology_type¶

Gets the technology_type of this ExpressionExperimentValueObject. # noqa: E501

Returns:: The technology_type of this ExpressionExperimentValueObject. # noqa: E501
Return type:: str

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

property trouble_details¶

Gets the trouble_details of this ExpressionExperimentValueObject. # noqa: E501

Returns:: The trouble_details of this ExpressionExperimentValueObject. # noqa: E501
Return type:: str

property troubled¶

Gets the troubled of this ExpressionExperimentValueObject. # noqa: E501

Returns:: The troubled of this ExpressionExperimentValueObject. # noqa: E501
Return type:: bool

class gemmapy.sdk.models.ExpressionExperimentWithSearchResultValueObject(id=None, last_updated=None, troubled=None, last_troubled_event=None, needs_attention=None, last_needs_attention_event=None, curation_note=None, last_note_update_event=None, number_of_bio_assays=None, description=None, name=None, accession=None, batch_confound=None, batch_effect=None, batch_effect_statistics=None, external_database=None, external_database_uri=None, external_uri=None, geeq=None, metadata=None, short_name=None, source=None, technology_type=None, search_result=None, taxon_id=None, bio_assay_count=None, trouble_details=None, number_of_array_designs=None, number_of_processed_expression_vectors=None, taxon=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

ExpressionExperimentWithSearchResultValueObject - a model defined in Swagger

property accession¶

Gets the accession of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The accession of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: str

attribute_map = {'accession': 'accession', 'batch_confound': 'batchConfound', 'batch_effect': 'batchEffect', 'batch_effect_statistics': 'batchEffectStatistics', 'bio_assay_count': 'bioAssayCount', 'curation_note': 'curationNote', 'description': 'description', 'external_database': 'externalDatabase', 'external_database_uri': 'externalDatabaseUri', 'external_uri': 'externalUri', 'geeq': 'geeq', 'id': 'id', 'last_needs_attention_event': 'lastNeedsAttentionEvent', 'last_note_update_event': 'lastNoteUpdateEvent', 'last_troubled_event': 'lastTroubledEvent', 'last_updated': 'lastUpdated', 'metadata': 'metadata', 'name': 'name', 'needs_attention': 'needsAttention', 'number_of_array_designs': 'numberOfArrayDesigns', 'number_of_bio_assays': 'numberOfBioAssays', 'number_of_processed_expression_vectors': 'numberOfProcessedExpressionVectors', 'search_result': 'searchResult', 'short_name': 'shortName', 'source': 'source', 'taxon': 'taxon', 'taxon_id': 'taxonId', 'technology_type': 'technologyType', 'trouble_details': 'troubleDetails', 'troubled': 'troubled'}¶

property batch_confound¶

Gets the batch_confound of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The batch_confound of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: str

property batch_effect¶

Gets the batch_effect of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The batch_effect of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: str

property batch_effect_statistics¶

Gets the batch_effect_statistics of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The batch_effect_statistics of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: str

property bio_assay_count¶

Gets the bio_assay_count of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The bio_assay_count of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: int

property curation_note¶

Gets the curation_note of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The curation_note of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: str

property description¶

Gets the description of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The description of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: str

property external_database¶

Gets the external_database of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The external_database of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: str

property external_database_uri¶

Gets the external_database_uri of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The external_database_uri of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: str

property external_uri¶

Gets the external_uri of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The external_uri of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: str

property geeq¶

Gets the geeq of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The geeq of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: GeeqValueObject

property id¶

Gets the id of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The id of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: int

property last_needs_attention_event¶

Gets the last_needs_attention_event of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The last_needs_attention_event of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: AuditEventValueObject

property last_note_update_event¶

Gets the last_note_update_event of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The last_note_update_event of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: AuditEventValueObject

property last_troubled_event¶

Gets the last_troubled_event of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The last_troubled_event of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: AuditEventValueObject

property last_updated¶

Gets the last_updated of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The last_updated of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: datetime

property metadata¶

Gets the metadata of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The metadata of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: str

property name¶

Gets the name of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The name of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: str

property needs_attention¶

Gets the needs_attention of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The needs_attention of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: bool

property number_of_array_designs¶

Gets the number_of_array_designs of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The number_of_array_designs of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: int

property number_of_bio_assays¶

Gets the number_of_bio_assays of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The number_of_bio_assays of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: int

property number_of_processed_expression_vectors¶

Gets the number_of_processed_expression_vectors of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The number_of_processed_expression_vectors of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: int

property search_result¶

Gets the search_result of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The search_result of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: SearchResultValueObjectExpressionExperimentValueObject

property short_name¶

Gets the short_name of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The short_name of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: str

property source¶

Gets the source of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The source of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: str

swagger_types = {'accession': 'str', 'batch_confound': 'str', 'batch_effect': 'str', 'batch_effect_statistics': 'str', 'bio_assay_count': 'int', 'curation_note': 'str', 'description': 'str', 'external_database': 'str', 'external_database_uri': 'str', 'external_uri': 'str', 'geeq': 'GeeqValueObject', 'id': 'int', 'last_needs_attention_event': 'AuditEventValueObject', 'last_note_update_event': 'AuditEventValueObject', 'last_troubled_event': 'AuditEventValueObject', 'last_updated': 'datetime', 'metadata': 'str', 'name': 'str', 'needs_attention': 'bool', 'number_of_array_designs': 'int', 'number_of_bio_assays': 'int', 'number_of_processed_expression_vectors': 'int', 'search_result': 'SearchResultValueObjectExpressionExperimentValueObject', 'short_name': 'str', 'source': 'str', 'taxon': 'TaxonValueObject', 'taxon_id': 'int', 'technology_type': 'str', 'trouble_details': 'str', 'troubled': 'bool'}¶

property taxon¶

Gets the taxon of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The taxon of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: TaxonValueObject

property taxon_id¶

Gets the taxon_id of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The taxon_id of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: int

property technology_type¶

Gets the technology_type of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The technology_type of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: str

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

property trouble_details¶

Gets the trouble_details of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The trouble_details of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: str

property troubled¶

Gets the troubled of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The troubled of this ExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: bool

class gemmapy.sdk.models.ExternalDatabaseValueObject(id=None, name=None, description=None, uri=None, release_version=None, release_url=None, last_updated=None, external_databases=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

ExternalDatabaseValueObject - a model defined in Swagger

attribute_map = {'description': 'description', 'external_databases': 'externalDatabases', 'id': 'id', 'last_updated': 'lastUpdated', 'name': 'name', 'release_url': 'releaseUrl', 'release_version': 'releaseVersion', 'uri': 'uri'}¶

property description¶

Gets the description of this ExternalDatabaseValueObject. # noqa: E501

Returns:: The description of this ExternalDatabaseValueObject. # noqa: E501
Return type:: str

property external_databases¶

Gets the external_databases of this ExternalDatabaseValueObject. # noqa: E501

Returns:: The external_databases of this ExternalDatabaseValueObject. # noqa: E501
Return type:: list[ExternalDatabaseValueObject]

property id¶

Gets the id of this ExternalDatabaseValueObject. # noqa: E501

Returns:: The id of this ExternalDatabaseValueObject. # noqa: E501
Return type:: int

property last_updated¶

Gets the last_updated of this ExternalDatabaseValueObject. # noqa: E501

Returns:: The last_updated of this ExternalDatabaseValueObject. # noqa: E501
Return type:: datetime

property name¶

Gets the name of this ExternalDatabaseValueObject. # noqa: E501

Returns:: The name of this ExternalDatabaseValueObject. # noqa: E501
Return type:: str

property release_url¶

Gets the release_url of this ExternalDatabaseValueObject. # noqa: E501

Returns:: The release_url of this ExternalDatabaseValueObject. # noqa: E501
Return type:: str

property release_version¶

Gets the release_version of this ExternalDatabaseValueObject. # noqa: E501

Returns:: The release_version of this ExternalDatabaseValueObject. # noqa: E501
Return type:: str

swagger_types = {'description': 'str', 'external_databases': 'list[ExternalDatabaseValueObject]', 'id': 'int', 'last_updated': 'datetime', 'name': 'str', 'release_url': 'str', 'release_version': 'str', 'uri': 'str'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

property uri¶

Gets the uri of this ExternalDatabaseValueObject. # noqa: E501

Returns:: The uri of this ExternalDatabaseValueObject. # noqa: E501
Return type:: str

class gemmapy.sdk.models.FactorValueBasicValueObject(id=None, ontology_id=None, experimental_factor_id=None, experimental_factor_category=None, measurement=None, characteristics=None, statements=None, value=None, summary=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

FactorValueBasicValueObject - a model defined in Swagger

attribute_map = {'characteristics': 'characteristics', 'experimental_factor_category': 'experimentalFactorCategory', 'experimental_factor_id': 'experimentalFactorId', 'id': 'id', 'measurement': 'measurement', 'ontology_id': 'ontologyId', 'statements': 'statements', 'summary': 'summary', 'value': 'value'}¶

property characteristics¶

Gets the characteristics of this FactorValueBasicValueObject. # noqa: E501

Returns:: The characteristics of this FactorValueBasicValueObject. # noqa: E501
Return type:: list[CharacteristicValueObject]

property experimental_factor_category¶

Gets the experimental_factor_category of this FactorValueBasicValueObject. # noqa: E501

Returns:: The experimental_factor_category of this FactorValueBasicValueObject. # noqa: E501
Return type:: CharacteristicValueObject

property experimental_factor_id¶

Gets the experimental_factor_id of this FactorValueBasicValueObject. # noqa: E501

Returns:: The experimental_factor_id of this FactorValueBasicValueObject. # noqa: E501
Return type:: int

property id¶

Gets the id of this FactorValueBasicValueObject. # noqa: E501

Returns:: The id of this FactorValueBasicValueObject. # noqa: E501
Return type:: int

property measurement¶

Gets the measurement of this FactorValueBasicValueObject. # noqa: E501

Returns:: The measurement of this FactorValueBasicValueObject. # noqa: E501
Return type:: MeasurementValueObject

property ontology_id¶

Gets the ontology_id of this FactorValueBasicValueObject. # noqa: E501

Returns:: The ontology_id of this FactorValueBasicValueObject. # noqa: E501
Return type:: str

property statements¶

Gets the statements of this FactorValueBasicValueObject. # noqa: E501

Returns:: The statements of this FactorValueBasicValueObject. # noqa: E501
Return type:: list[StatementValueObject]

property summary¶

Gets the summary of this FactorValueBasicValueObject. # noqa: E501

Returns:: The summary of this FactorValueBasicValueObject. # noqa: E501
Return type:: str

swagger_types = {'characteristics': 'list[CharacteristicValueObject]', 'experimental_factor_category': 'CharacteristicValueObject', 'experimental_factor_id': 'int', 'id': 'int', 'measurement': 'MeasurementValueObject', 'ontology_id': 'str', 'statements': 'list[StatementValueObject]', 'summary': 'str', 'value': 'str'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

property value¶

Gets the value of this FactorValueBasicValueObject. # noqa: E501

Use summary if you need a human-readable representation of this factor value or lookup the characteristics bag. # noqa: E501

Returns:: The value of this FactorValueBasicValueObject. # noqa: E501
Return type:: str

class gemmapy.sdk.models.FactorValueValueObject(id=None, ontology_id=None, experimental_factor_id=None, experimental_factor_category=None, characteristics=None, statements=None, summary=None, factor_id=None, char_id=None, category=None, category_uri=None, description=None, factor_value=None, measurement=None, is_measurement=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

FactorValueValueObject - a model defined in Swagger

attribute_map = {'category': 'category', 'category_uri': 'categoryUri', 'char_id': 'charId', 'characteristics': 'characteristics', 'description': 'description', 'experimental_factor_category': 'experimentalFactorCategory', 'experimental_factor_id': 'experimentalFactorId', 'factor_id': 'factorId', 'factor_value': 'factorValue', 'id': 'id', 'is_measurement': 'isMeasurement', 'measurement': 'measurement', 'ontology_id': 'ontologyId', 'statements': 'statements', 'summary': 'summary'}¶

property category¶

Gets the category of this FactorValueValueObject. # noqa: E501

Use experimentalFactorCategory.category instead. # noqa: E501

Returns:: The category of this FactorValueValueObject. # noqa: E501
Return type:: str

property category_uri¶

Gets the category_uri of this FactorValueValueObject. # noqa: E501

Use experimentalFactorCategory.categoryUri instead. # noqa: E501

Returns:: The category_uri of this FactorValueValueObject. # noqa: E501
Return type:: str

property char_id¶

Gets the char_id of this FactorValueValueObject. # noqa: E501

Use measurement.id or characteristics.id instead. # noqa: E501

Returns:: The char_id of this FactorValueValueObject. # noqa: E501
Return type:: int

property characteristics¶

Gets the characteristics of this FactorValueValueObject. # noqa: E501

Returns:: The characteristics of this FactorValueValueObject. # noqa: E501
Return type:: list[CharacteristicValueObject]

property description¶

Gets the description of this FactorValueValueObject. # noqa: E501

This property is never filled nor used; use summary if you need a human-readable representation of this factor value. # noqa: E501

Returns:: The description of this FactorValueValueObject. # noqa: E501
Return type:: str

property experimental_factor_category¶

Gets the experimental_factor_category of this FactorValueValueObject. # noqa: E501

Returns:: The experimental_factor_category of this FactorValueValueObject. # noqa: E501
Return type:: CharacteristicValueObject

property experimental_factor_id¶

Gets the experimental_factor_id of this FactorValueValueObject. # noqa: E501

Returns:: The experimental_factor_id of this FactorValueValueObject. # noqa: E501
Return type:: int

property factor_id¶

Gets the factor_id of this FactorValueValueObject. # noqa: E501

Use experimentalFactorId instead. # noqa: E501

Returns:: The factor_id of this FactorValueValueObject. # noqa: E501
Return type:: int

property factor_value¶

Gets the factor_value of this FactorValueValueObject. # noqa: E501

Use summary if you need a human-readable representation of this factor value or lookup the characteristics bag. # noqa: E501

Returns:: The factor_value of this FactorValueValueObject. # noqa: E501
Return type:: str

property id¶

Gets the id of this FactorValueValueObject. # noqa: E501

Returns:: The id of this FactorValueValueObject. # noqa: E501
Return type:: int

property is_measurement¶

Gets the is_measurement of this FactorValueValueObject. # noqa: E501

Check if a measurement key exists instead. # noqa: E501

Returns:: The is_measurement of this FactorValueValueObject. # noqa: E501
Return type:: bool

property measurement¶

Gets the measurement of this FactorValueValueObject. # noqa: E501

Returns:: The measurement of this FactorValueValueObject. # noqa: E501
Return type:: MeasurementValueObject

property ontology_id¶

Gets the ontology_id of this FactorValueValueObject. # noqa: E501

Returns:: The ontology_id of this FactorValueValueObject. # noqa: E501
Return type:: str

property statements¶

Gets the statements of this FactorValueValueObject. # noqa: E501

Returns:: The statements of this FactorValueValueObject. # noqa: E501
Return type:: list[StatementValueObject]

property summary¶

Gets the summary of this FactorValueValueObject. # noqa: E501

Returns:: The summary of this FactorValueValueObject. # noqa: E501
Return type:: str

swagger_types = {'category': 'str', 'category_uri': 'str', 'char_id': 'int', 'characteristics': 'list[CharacteristicValueObject]', 'description': 'str', 'experimental_factor_category': 'CharacteristicValueObject', 'experimental_factor_id': 'int', 'factor_id': 'int', 'factor_value': 'str', 'id': 'int', 'is_measurement': 'bool', 'measurement': 'MeasurementValueObject', 'ontology_id': 'str', 'statements': 'list[StatementValueObject]', 'summary': 'str'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.FilterArgArrayDesign[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

FilterArgArrayDesign - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.FilterArgExpressionAnalysisResultSet[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

FilterArgExpressionAnalysisResultSet - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.FilterArgExpressionExperiment[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

FilterArgExpressionExperiment - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.FilteredAndPaginatedResponseDataObjectArrayDesignValueObject(data=None, filter=None, group_by=None, sort=None, offset=None, limit=None, total_elements=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

FilteredAndPaginatedResponseDataObjectArrayDesignValueObject - a model defined in Swagger

attribute_map = {'data': 'data', 'filter': 'filter', 'group_by': 'groupBy', 'limit': 'limit', 'offset': 'offset', 'sort': 'sort', 'total_elements': 'totalElements'}¶

property data¶

Gets the data of this FilteredAndPaginatedResponseDataObjectArrayDesignValueObject. # noqa: E501

Returns:: The data of this FilteredAndPaginatedResponseDataObjectArrayDesignValueObject. # noqa: E501
Return type:: list[ArrayDesignValueObject]

property filter¶

Gets the filter of this FilteredAndPaginatedResponseDataObjectArrayDesignValueObject. # noqa: E501

Returns:: The filter of this FilteredAndPaginatedResponseDataObjectArrayDesignValueObject. # noqa: E501
Return type:: str

property group_by¶

Gets the group_by of this FilteredAndPaginatedResponseDataObjectArrayDesignValueObject. # noqa: E501

Returns:: The group_by of this FilteredAndPaginatedResponseDataObjectArrayDesignValueObject. # noqa: E501
Return type:: list[str]

property limit¶

Gets the limit of this FilteredAndPaginatedResponseDataObjectArrayDesignValueObject. # noqa: E501

Returns:: The limit of this FilteredAndPaginatedResponseDataObjectArrayDesignValueObject. # noqa: E501
Return type:: int

property offset¶

Gets the offset of this FilteredAndPaginatedResponseDataObjectArrayDesignValueObject. # noqa: E501

Returns:: The offset of this FilteredAndPaginatedResponseDataObjectArrayDesignValueObject. # noqa: E501
Return type:: int

property sort¶

Gets the sort of this FilteredAndPaginatedResponseDataObjectArrayDesignValueObject. # noqa: E501

Returns:: The sort of this FilteredAndPaginatedResponseDataObjectArrayDesignValueObject. # noqa: E501
Return type:: SortValueObject

swagger_types = {'data': 'list[ArrayDesignValueObject]', 'filter': 'str', 'group_by': 'list[str]', 'limit': 'int', 'offset': 'int', 'sort': 'SortValueObject', 'total_elements': 'int'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

property total_elements¶

Gets the total_elements of this FilteredAndPaginatedResponseDataObjectArrayDesignValueObject. # noqa: E501

Returns:: The total_elements of this FilteredAndPaginatedResponseDataObjectArrayDesignValueObject. # noqa: E501
Return type:: int

class gemmapy.sdk.models.FilteredAndPaginatedResponseDataObjectCompositeSequenceValueObject(data=None, filter=None, group_by=None, sort=None, offset=None, limit=None, total_elements=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

FilteredAndPaginatedResponseDataObjectCompositeSequenceValueObject - a model defined in Swagger

attribute_map = {'data': 'data', 'filter': 'filter', 'group_by': 'groupBy', 'limit': 'limit', 'offset': 'offset', 'sort': 'sort', 'total_elements': 'totalElements'}¶

property data¶

Gets the data of this FilteredAndPaginatedResponseDataObjectCompositeSequenceValueObject. # noqa: E501

Returns:: The data of this FilteredAndPaginatedResponseDataObjectCompositeSequenceValueObject. # noqa: E501
Return type:: list[CompositeSequenceValueObject]

property filter¶

Gets the filter of this FilteredAndPaginatedResponseDataObjectCompositeSequenceValueObject. # noqa: E501

Returns:: The filter of this FilteredAndPaginatedResponseDataObjectCompositeSequenceValueObject. # noqa: E501
Return type:: str

property group_by¶

Gets the group_by of this FilteredAndPaginatedResponseDataObjectCompositeSequenceValueObject. # noqa: E501

Returns:: The group_by of this FilteredAndPaginatedResponseDataObjectCompositeSequenceValueObject. # noqa: E501
Return type:: list[str]

property limit¶

Gets the limit of this FilteredAndPaginatedResponseDataObjectCompositeSequenceValueObject. # noqa: E501

Returns:: The limit of this FilteredAndPaginatedResponseDataObjectCompositeSequenceValueObject. # noqa: E501
Return type:: int

property offset¶

Gets the offset of this FilteredAndPaginatedResponseDataObjectCompositeSequenceValueObject. # noqa: E501

Returns:: The offset of this FilteredAndPaginatedResponseDataObjectCompositeSequenceValueObject. # noqa: E501
Return type:: int

property sort¶

Gets the sort of this FilteredAndPaginatedResponseDataObjectCompositeSequenceValueObject. # noqa: E501

Returns:: The sort of this FilteredAndPaginatedResponseDataObjectCompositeSequenceValueObject. # noqa: E501
Return type:: SortValueObject

swagger_types = {'data': 'list[CompositeSequenceValueObject]', 'filter': 'str', 'group_by': 'list[str]', 'limit': 'int', 'offset': 'int', 'sort': 'SortValueObject', 'total_elements': 'int'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

property total_elements¶

Gets the total_elements of this FilteredAndPaginatedResponseDataObjectCompositeSequenceValueObject. # noqa: E501

Returns:: The total_elements of this FilteredAndPaginatedResponseDataObjectCompositeSequenceValueObject. # noqa: E501
Return type:: int

class gemmapy.sdk.models.FilteredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultSetValueObject(data=None, filter=None, group_by=None, sort=None, offset=None, limit=None, total_elements=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

FilteredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultSetValueObject - a model defined in Swagger

attribute_map = {'data': 'data', 'filter': 'filter', 'group_by': 'groupBy', 'limit': 'limit', 'offset': 'offset', 'sort': 'sort', 'total_elements': 'totalElements'}¶

property data¶

Gets the data of this FilteredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultSetValueObject. # noqa: E501

Returns:: The data of this FilteredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultSetValueObject. # noqa: E501
Return type:: list[DifferentialExpressionAnalysisResultSetValueObject]

property filter¶

Gets the filter of this FilteredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultSetValueObject. # noqa: E501

Returns:: The filter of this FilteredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultSetValueObject. # noqa: E501
Return type:: str

property group_by¶

Gets the group_by of this FilteredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultSetValueObject. # noqa: E501

Returns:: The group_by of this FilteredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultSetValueObject. # noqa: E501
Return type:: list[str]

property limit¶

Gets the limit of this FilteredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultSetValueObject. # noqa: E501

Returns:: The limit of this FilteredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultSetValueObject. # noqa: E501
Return type:: int

property offset¶

Gets the offset of this FilteredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultSetValueObject. # noqa: E501

Returns:: The offset of this FilteredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultSetValueObject. # noqa: E501
Return type:: int

property sort¶

Gets the sort of this FilteredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultSetValueObject. # noqa: E501

Returns:: The sort of this FilteredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultSetValueObject. # noqa: E501
Return type:: SortValueObject

swagger_types = {'data': 'list[DifferentialExpressionAnalysisResultSetValueObject]', 'filter': 'str', 'group_by': 'list[str]', 'limit': 'int', 'offset': 'int', 'sort': 'SortValueObject', 'total_elements': 'int'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

property total_elements¶

Gets the total_elements of this FilteredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultSetValueObject. # noqa: E501

Returns:: The total_elements of this FilteredAndPaginatedResponseDataObjectDifferentialExpressionAnalysisResultSetValueObject. # noqa: E501
Return type:: int

class gemmapy.sdk.models.FilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject(data=None, filter=None, group_by=None, sort=None, offset=None, limit=None, total_elements=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

FilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject - a model defined in Swagger

attribute_map = {'data': 'data', 'filter': 'filter', 'group_by': 'groupBy', 'limit': 'limit', 'offset': 'offset', 'sort': 'sort', 'total_elements': 'totalElements'}¶

property data¶

Gets the data of this FilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501

Returns:: The data of this FilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501
Return type:: list[ExpressionExperimentValueObject]

property filter¶

Gets the filter of this FilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501

Returns:: The filter of this FilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501
Return type:: str

property group_by¶

Gets the group_by of this FilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501

Returns:: The group_by of this FilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501
Return type:: list[str]

property limit¶

Gets the limit of this FilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501

Returns:: The limit of this FilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501
Return type:: int

property offset¶

Gets the offset of this FilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501

Returns:: The offset of this FilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501
Return type:: int

property sort¶

Gets the sort of this FilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501

Returns:: The sort of this FilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501
Return type:: SortValueObject

swagger_types = {'data': 'list[ExpressionExperimentValueObject]', 'filter': 'str', 'group_by': 'list[str]', 'limit': 'int', 'offset': 'int', 'sort': 'SortValueObject', 'total_elements': 'int'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

property total_elements¶

Gets the total_elements of this FilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501

Returns:: The total_elements of this FilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501
Return type:: int

class gemmapy.sdk.models.FilteredAndPaginatedResponseDataObjectGeneValueObject(data=None, filter=None, group_by=None, sort=None, offset=None, limit=None, total_elements=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

FilteredAndPaginatedResponseDataObjectGeneValueObject - a model defined in Swagger

attribute_map = {'data': 'data', 'filter': 'filter', 'group_by': 'groupBy', 'limit': 'limit', 'offset': 'offset', 'sort': 'sort', 'total_elements': 'totalElements'}¶

property data¶

Gets the data of this FilteredAndPaginatedResponseDataObjectGeneValueObject. # noqa: E501

Returns:: The data of this FilteredAndPaginatedResponseDataObjectGeneValueObject. # noqa: E501
Return type:: list[GeneValueObject]

property filter¶

Gets the filter of this FilteredAndPaginatedResponseDataObjectGeneValueObject. # noqa: E501

Returns:: The filter of this FilteredAndPaginatedResponseDataObjectGeneValueObject. # noqa: E501
Return type:: str

property group_by¶

Gets the group_by of this FilteredAndPaginatedResponseDataObjectGeneValueObject. # noqa: E501

Returns:: The group_by of this FilteredAndPaginatedResponseDataObjectGeneValueObject. # noqa: E501
Return type:: list[str]

property limit¶

Gets the limit of this FilteredAndPaginatedResponseDataObjectGeneValueObject. # noqa: E501

Returns:: The limit of this FilteredAndPaginatedResponseDataObjectGeneValueObject. # noqa: E501
Return type:: int

property offset¶

Gets the offset of this FilteredAndPaginatedResponseDataObjectGeneValueObject. # noqa: E501

Returns:: The offset of this FilteredAndPaginatedResponseDataObjectGeneValueObject. # noqa: E501
Return type:: int

property sort¶

Gets the sort of this FilteredAndPaginatedResponseDataObjectGeneValueObject. # noqa: E501

Returns:: The sort of this FilteredAndPaginatedResponseDataObjectGeneValueObject. # noqa: E501
Return type:: SortValueObject

swagger_types = {'data': 'list[GeneValueObject]', 'filter': 'str', 'group_by': 'list[str]', 'limit': 'int', 'offset': 'int', 'sort': 'SortValueObject', 'total_elements': 'int'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

property total_elements¶

Gets the total_elements of this FilteredAndPaginatedResponseDataObjectGeneValueObject. # noqa: E501

Returns:: The total_elements of this FilteredAndPaginatedResponseDataObjectGeneValueObject. # noqa: E501
Return type:: int

class gemmapy.sdk.models.GeeqValueObject(id=None, public_quality_score=None, public_suitability_score=None, no_vectors=None, corr_mat_issues=None, replicates_issues=None, batch_corrected=None, s_score_publication=None, s_score_platform_amount=None, s_score_platform_tech_multi=None, s_score_avg_platform_popularity=None, s_score_avg_platform_size=None, s_score_sample_size=None, s_score_raw_data=None, s_score_missing_values=None, q_score_outliers=None, q_score_sample_mean_correlation=None, q_score_sample_median_correlation=None, q_score_sample_correlation_variance=None, q_score_platforms_tech=None, q_score_replicates=None, q_score_batch_info=None, q_score_public_batch_effect=None, q_score_public_batch_confound=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

GeeqValueObject - a model defined in Swagger

attribute_map = {'batch_corrected': 'batchCorrected', 'corr_mat_issues': 'corrMatIssues', 'id': 'id', 'no_vectors': 'noVectors', 'public_quality_score': 'publicQualityScore', 'public_suitability_score': 'publicSuitabilityScore', 'q_score_batch_info': 'qScoreBatchInfo', 'q_score_outliers': 'qScoreOutliers', 'q_score_platforms_tech': 'qScorePlatformsTech', 'q_score_public_batch_confound': 'qScorePublicBatchConfound', 'q_score_public_batch_effect': 'qScorePublicBatchEffect', 'q_score_replicates': 'qScoreReplicates', 'q_score_sample_correlation_variance': 'qScoreSampleCorrelationVariance', 'q_score_sample_mean_correlation': 'qScoreSampleMeanCorrelation', 'q_score_sample_median_correlation': 'qScoreSampleMedianCorrelation', 'replicates_issues': 'replicatesIssues', 's_score_avg_platform_popularity': 'sScoreAvgPlatformPopularity', 's_score_avg_platform_size': 'sScoreAvgPlatformSize', 's_score_missing_values': 'sScoreMissingValues', 's_score_platform_amount': 'sScorePlatformAmount', 's_score_platform_tech_multi': 'sScorePlatformTechMulti', 's_score_publication': 'sScorePublication', 's_score_raw_data': 'sScoreRawData', 's_score_sample_size': 'sScoreSampleSize'}¶

property batch_corrected¶

Gets the batch_corrected of this GeeqValueObject. # noqa: E501

Returns:: The batch_corrected of this GeeqValueObject. # noqa: E501
Return type:: bool

property corr_mat_issues¶

Gets the corr_mat_issues of this GeeqValueObject. # noqa: E501

Returns:: The corr_mat_issues of this GeeqValueObject. # noqa: E501
Return type:: str

property id¶

Gets the id of this GeeqValueObject. # noqa: E501

Returns:: The id of this GeeqValueObject. # noqa: E501
Return type:: int

property no_vectors¶

Gets the no_vectors of this GeeqValueObject. # noqa: E501

Returns:: The no_vectors of this GeeqValueObject. # noqa: E501
Return type:: bool

property public_quality_score¶

Gets the public_quality_score of this GeeqValueObject. # noqa: E501

Returns:: The public_quality_score of this GeeqValueObject. # noqa: E501
Return type:: float

property public_suitability_score¶

Gets the public_suitability_score of this GeeqValueObject. # noqa: E501

Returns:: The public_suitability_score of this GeeqValueObject. # noqa: E501
Return type:: float

property q_score_batch_info¶

Gets the q_score_batch_info of this GeeqValueObject. # noqa: E501

Returns:: The q_score_batch_info of this GeeqValueObject. # noqa: E501
Return type:: float

property q_score_outliers¶

Gets the q_score_outliers of this GeeqValueObject. # noqa: E501

Returns:: The q_score_outliers of this GeeqValueObject. # noqa: E501
Return type:: float

property q_score_platforms_tech¶

Gets the q_score_platforms_tech of this GeeqValueObject. # noqa: E501

Returns:: The q_score_platforms_tech of this GeeqValueObject. # noqa: E501
Return type:: float

property q_score_public_batch_confound¶

Gets the q_score_public_batch_confound of this GeeqValueObject. # noqa: E501

Returns:: The q_score_public_batch_confound of this GeeqValueObject. # noqa: E501
Return type:: float

property q_score_public_batch_effect¶

Gets the q_score_public_batch_effect of this GeeqValueObject. # noqa: E501

Returns:: The q_score_public_batch_effect of this GeeqValueObject. # noqa: E501
Return type:: float

property q_score_replicates¶

Gets the q_score_replicates of this GeeqValueObject. # noqa: E501

Returns:: The q_score_replicates of this GeeqValueObject. # noqa: E501
Return type:: float

property q_score_sample_correlation_variance¶

Gets the q_score_sample_correlation_variance of this GeeqValueObject. # noqa: E501

Returns:: The q_score_sample_correlation_variance of this GeeqValueObject. # noqa: E501
Return type:: float

property q_score_sample_mean_correlation¶

Gets the q_score_sample_mean_correlation of this GeeqValueObject. # noqa: E501

Returns:: The q_score_sample_mean_correlation of this GeeqValueObject. # noqa: E501
Return type:: float

property q_score_sample_median_correlation¶

Gets the q_score_sample_median_correlation of this GeeqValueObject. # noqa: E501

Returns:: The q_score_sample_median_correlation of this GeeqValueObject. # noqa: E501
Return type:: float

property replicates_issues¶

Gets the replicates_issues of this GeeqValueObject. # noqa: E501

Returns:: The replicates_issues of this GeeqValueObject. # noqa: E501
Return type:: str

property s_score_avg_platform_popularity¶

Gets the s_score_avg_platform_popularity of this GeeqValueObject. # noqa: E501

Returns:: The s_score_avg_platform_popularity of this GeeqValueObject. # noqa: E501
Return type:: float

property s_score_avg_platform_size¶

Gets the s_score_avg_platform_size of this GeeqValueObject. # noqa: E501

Returns:: The s_score_avg_platform_size of this GeeqValueObject. # noqa: E501
Return type:: float

property s_score_missing_values¶

Gets the s_score_missing_values of this GeeqValueObject. # noqa: E501

Returns:: The s_score_missing_values of this GeeqValueObject. # noqa: E501
Return type:: float

property s_score_platform_amount¶

Gets the s_score_platform_amount of this GeeqValueObject. # noqa: E501

Returns:: The s_score_platform_amount of this GeeqValueObject. # noqa: E501
Return type:: float

property s_score_platform_tech_multi¶

Gets the s_score_platform_tech_multi of this GeeqValueObject. # noqa: E501

Returns:: The s_score_platform_tech_multi of this GeeqValueObject. # noqa: E501
Return type:: float

property s_score_publication¶

Gets the s_score_publication of this GeeqValueObject. # noqa: E501

Returns:: The s_score_publication of this GeeqValueObject. # noqa: E501
Return type:: float

property s_score_raw_data¶

Gets the s_score_raw_data of this GeeqValueObject. # noqa: E501

Returns:: The s_score_raw_data of this GeeqValueObject. # noqa: E501
Return type:: float

property s_score_sample_size¶

Gets the s_score_sample_size of this GeeqValueObject. # noqa: E501

Returns:: The s_score_sample_size of this GeeqValueObject. # noqa: E501
Return type:: float

swagger_types = {'batch_corrected': 'bool', 'corr_mat_issues': 'str', 'id': 'int', 'no_vectors': 'bool', 'public_quality_score': 'float', 'public_suitability_score': 'float', 'q_score_batch_info': 'float', 'q_score_outliers': 'float', 'q_score_platforms_tech': 'float', 'q_score_public_batch_confound': 'float', 'q_score_public_batch_effect': 'float', 'q_score_replicates': 'float', 'q_score_sample_correlation_variance': 'float', 'q_score_sample_mean_correlation': 'float', 'q_score_sample_median_correlation': 'float', 'replicates_issues': 'str', 's_score_avg_platform_popularity': 'float', 's_score_avg_platform_size': 'float', 's_score_missing_values': 'float', 's_score_platform_amount': 'float', 's_score_platform_tech_multi': 'float', 's_score_publication': 'float', 's_score_raw_data': 'float', 's_score_sample_size': 'float'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.Gene[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

Gene - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.Gene1[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

Gene1 - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.Gene2[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

Gene2 - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.Gene3[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

Gene3 - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.Gene4[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

Gene4 - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.GeneArg[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

GeneArg - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.GeneElementExpressionsValueObject(gene_official_symbol=None, gene_ncbi_id=None, vectors=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

GeneElementExpressionsValueObject - a model defined in Swagger

attribute_map = {'gene_ncbi_id': 'geneNcbiId', 'gene_official_symbol': 'geneOfficialSymbol', 'vectors': 'vectors'}¶

property gene_ncbi_id¶

Gets the gene_ncbi_id of this GeneElementExpressionsValueObject. # noqa: E501

Returns:: The gene_ncbi_id of this GeneElementExpressionsValueObject. # noqa: E501
Return type:: int

property gene_official_symbol¶

Gets the gene_official_symbol of this GeneElementExpressionsValueObject. # noqa: E501

Returns:: The gene_official_symbol of this GeneElementExpressionsValueObject. # noqa: E501
Return type:: str

swagger_types = {'gene_ncbi_id': 'int', 'gene_official_symbol': 'str', 'vectors': 'list[VectorElementValueObject]'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

property vectors¶

Gets the vectors of this GeneElementExpressionsValueObject. # noqa: E501

Returns:: The vectors of this GeneElementExpressionsValueObject. # noqa: E501
Return type:: list[VectorElementValueObject]

class gemmapy.sdk.models.GeneOntologyTermValueObject(go_id=None, label=None, uri=None, comment=None, local_name=None, term=None, obsolete=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

GeneOntologyTermValueObject - a model defined in Swagger

attribute_map = {'comment': 'comment', 'go_id': 'goId', 'label': 'label', 'local_name': 'localName', 'obsolete': 'obsolete', 'term': 'term', 'uri': 'uri'}¶

property comment¶

Gets the comment of this GeneOntologyTermValueObject. # noqa: E501

Returns:: The comment of this GeneOntologyTermValueObject. # noqa: E501
Return type:: str

property go_id¶

Gets the go_id of this GeneOntologyTermValueObject. # noqa: E501

Returns:: The go_id of this GeneOntologyTermValueObject. # noqa: E501
Return type:: str

property label¶

Gets the label of this GeneOntologyTermValueObject. # noqa: E501

Returns:: The label of this GeneOntologyTermValueObject. # noqa: E501
Return type:: str

property local_name¶

Gets the local_name of this GeneOntologyTermValueObject. # noqa: E501

Returns:: The local_name of this GeneOntologyTermValueObject. # noqa: E501
Return type:: str

property obsolete¶

Gets the obsolete of this GeneOntologyTermValueObject. # noqa: E501

Returns:: The obsolete of this GeneOntologyTermValueObject. # noqa: E501
Return type:: bool

swagger_types = {'comment': 'str', 'go_id': 'str', 'label': 'str', 'local_name': 'str', 'obsolete': 'bool', 'term': 'str', 'uri': 'str'}¶

property term¶

Gets the term of this GeneOntologyTermValueObject. # noqa: E501

Returns:: The term of this GeneOntologyTermValueObject. # noqa: E501
Return type:: str

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

property uri¶

Gets the uri of this GeneOntologyTermValueObject. # noqa: E501

Returns:: The uri of this GeneOntologyTermValueObject. # noqa: E501
Return type:: str

class gemmapy.sdk.models.GeneSetValueObject(id=None, name=None, description=None, gene_ids=None, size=None, taxon=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

GeneSetValueObject - a model defined in Swagger

attribute_map = {'description': 'description', 'gene_ids': 'geneIds', 'id': 'id', 'name': 'name', 'size': 'size', 'taxon': 'taxon'}¶

property description¶

Gets the description of this GeneSetValueObject. # noqa: E501

Returns:: The description of this GeneSetValueObject. # noqa: E501
Return type:: str

property gene_ids¶

Gets the gene_ids of this GeneSetValueObject. # noqa: E501

Returns:: The gene_ids of this GeneSetValueObject. # noqa: E501
Return type:: list[int]

property id¶

Gets the id of this GeneSetValueObject. # noqa: E501

Returns:: The id of this GeneSetValueObject. # noqa: E501
Return type:: int

property name¶

Gets the name of this GeneSetValueObject. # noqa: E501

Returns:: The name of this GeneSetValueObject. # noqa: E501
Return type:: str

property size¶

Gets the size of this GeneSetValueObject. # noqa: E501

Returns:: The size of this GeneSetValueObject. # noqa: E501
Return type:: int

swagger_types = {'description': 'str', 'gene_ids': 'list[int]', 'id': 'int', 'name': 'str', 'size': 'int', 'taxon': 'TaxonValueObject'}¶

property taxon¶

Gets the taxon of this GeneSetValueObject. # noqa: E501

Returns:: The taxon of this GeneSetValueObject. # noqa: E501
Return type:: TaxonValueObject

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.GeneValueObject(id=None, aliases=None, multifunctionality_rank=None, ncbi_id=None, ensembl_id=None, accessions=None, official_name=None, official_symbol=None, taxon=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

GeneValueObject - a model defined in Swagger

property accessions¶

Gets the accessions of this GeneValueObject. # noqa: E501

Returns:: The accessions of this GeneValueObject. # noqa: E501
Return type:: list[DatabaseEntryValueObject]

property aliases¶

Gets the aliases of this GeneValueObject. # noqa: E501

Returns:: The aliases of this GeneValueObject. # noqa: E501
Return type:: list[str]

attribute_map = {'accessions': 'accessions', 'aliases': 'aliases', 'ensembl_id': 'ensemblId', 'id': 'id', 'multifunctionality_rank': 'multifunctionalityRank', 'ncbi_id': 'ncbiId', 'official_name': 'officialName', 'official_symbol': 'officialSymbol', 'taxon': 'taxon'}¶

property ensembl_id¶

Gets the ensembl_id of this GeneValueObject. # noqa: E501

Returns:: The ensembl_id of this GeneValueObject. # noqa: E501
Return type:: str

property id¶

Gets the id of this GeneValueObject. # noqa: E501

Returns:: The id of this GeneValueObject. # noqa: E501
Return type:: int

property multifunctionality_rank¶

Gets the multifunctionality_rank of this GeneValueObject. # noqa: E501

Returns:: The multifunctionality_rank of this GeneValueObject. # noqa: E501
Return type:: float

property ncbi_id¶

Gets the ncbi_id of this GeneValueObject. # noqa: E501

Returns:: The ncbi_id of this GeneValueObject. # noqa: E501
Return type:: int

property official_name¶

Gets the official_name of this GeneValueObject. # noqa: E501

Returns:: The official_name of this GeneValueObject. # noqa: E501
Return type:: str

property official_symbol¶

Gets the official_symbol of this GeneValueObject. # noqa: E501

Returns:: The official_symbol of this GeneValueObject. # noqa: E501
Return type:: str

swagger_types = {'accessions': 'list[DatabaseEntryValueObject]', 'aliases': 'list[str]', 'ensembl_id': 'str', 'id': 'int', 'multifunctionality_rank': 'float', 'ncbi_id': 'int', 'official_name': 'str', 'official_symbol': 'str', 'taxon': 'TaxonValueObject'}¶

property taxon¶

Gets the taxon of this GeneValueObject. # noqa: E501

Returns:: The taxon of this GeneValueObject. # noqa: E501
Return type:: TaxonValueObject

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.LimitedResponseDataObjectAnnotationWithUsageStatisticsValueObject(data=None, query=None, filter=None, group_by=None, sort=None, limit=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

LimitedResponseDataObjectAnnotationWithUsageStatisticsValueObject - a model defined in Swagger

attribute_map = {'data': 'data', 'filter': 'filter', 'group_by': 'groupBy', 'limit': 'limit', 'query': 'query', 'sort': 'sort'}¶

property data¶

Gets the data of this LimitedResponseDataObjectAnnotationWithUsageStatisticsValueObject. # noqa: E501

Returns:: The data of this LimitedResponseDataObjectAnnotationWithUsageStatisticsValueObject. # noqa: E501
Return type:: list[AnnotationWithUsageStatisticsValueObject]

property filter¶

Gets the filter of this LimitedResponseDataObjectAnnotationWithUsageStatisticsValueObject. # noqa: E501

Returns:: The filter of this LimitedResponseDataObjectAnnotationWithUsageStatisticsValueObject. # noqa: E501
Return type:: str

property group_by¶

Gets the group_by of this LimitedResponseDataObjectAnnotationWithUsageStatisticsValueObject. # noqa: E501

Returns:: The group_by of this LimitedResponseDataObjectAnnotationWithUsageStatisticsValueObject. # noqa: E501
Return type:: list[str]

property limit¶

Gets the limit of this LimitedResponseDataObjectAnnotationWithUsageStatisticsValueObject. # noqa: E501

Returns:: The limit of this LimitedResponseDataObjectAnnotationWithUsageStatisticsValueObject. # noqa: E501
Return type:: int

property query¶

Gets the query of this LimitedResponseDataObjectAnnotationWithUsageStatisticsValueObject. # noqa: E501

Returns:: The query of this LimitedResponseDataObjectAnnotationWithUsageStatisticsValueObject. # noqa: E501
Return type:: str

property sort¶

Gets the sort of this LimitedResponseDataObjectAnnotationWithUsageStatisticsValueObject. # noqa: E501

Returns:: The sort of this LimitedResponseDataObjectAnnotationWithUsageStatisticsValueObject. # noqa: E501
Return type:: SortValueObject

swagger_types = {'data': 'list[AnnotationWithUsageStatisticsValueObject]', 'filter': 'str', 'group_by': 'list[str]', 'limit': 'int', 'query': 'str', 'sort': 'SortValueObject'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.LimitedResponseDataObjectArrayDesignWithUsageStatisticsValueObject(data=None, query=None, filter=None, group_by=None, sort=None, limit=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

LimitedResponseDataObjectArrayDesignWithUsageStatisticsValueObject - a model defined in Swagger

attribute_map = {'data': 'data', 'filter': 'filter', 'group_by': 'groupBy', 'limit': 'limit', 'query': 'query', 'sort': 'sort'}¶

property data¶

Gets the data of this LimitedResponseDataObjectArrayDesignWithUsageStatisticsValueObject. # noqa: E501

Returns:: The data of this LimitedResponseDataObjectArrayDesignWithUsageStatisticsValueObject. # noqa: E501
Return type:: list[ArrayDesignWithUsageStatisticsValueObject]

property filter¶

Gets the filter of this LimitedResponseDataObjectArrayDesignWithUsageStatisticsValueObject. # noqa: E501

Returns:: The filter of this LimitedResponseDataObjectArrayDesignWithUsageStatisticsValueObject. # noqa: E501
Return type:: str

property group_by¶

Gets the group_by of this LimitedResponseDataObjectArrayDesignWithUsageStatisticsValueObject. # noqa: E501

Returns:: The group_by of this LimitedResponseDataObjectArrayDesignWithUsageStatisticsValueObject. # noqa: E501
Return type:: list[str]

property limit¶

Gets the limit of this LimitedResponseDataObjectArrayDesignWithUsageStatisticsValueObject. # noqa: E501

Returns:: The limit of this LimitedResponseDataObjectArrayDesignWithUsageStatisticsValueObject. # noqa: E501
Return type:: int

property query¶

Gets the query of this LimitedResponseDataObjectArrayDesignWithUsageStatisticsValueObject. # noqa: E501

Returns:: The query of this LimitedResponseDataObjectArrayDesignWithUsageStatisticsValueObject. # noqa: E501
Return type:: str

property sort¶

Gets the sort of this LimitedResponseDataObjectArrayDesignWithUsageStatisticsValueObject. # noqa: E501

Returns:: The sort of this LimitedResponseDataObjectArrayDesignWithUsageStatisticsValueObject. # noqa: E501
Return type:: SortValueObject

swagger_types = {'data': 'list[ArrayDesignWithUsageStatisticsValueObject]', 'filter': 'str', 'group_by': 'list[str]', 'limit': 'int', 'query': 'str', 'sort': 'SortValueObject'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.MeasurementValueObject(id=None, value=None, unit=None, type=None, representation=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

MeasurementValueObject - a model defined in Swagger

attribute_map = {'id': 'id', 'representation': 'representation', 'type': 'type', 'unit': 'unit', 'value': 'value'}¶

property id¶

Gets the id of this MeasurementValueObject. # noqa: E501

Returns:: The id of this MeasurementValueObject. # noqa: E501
Return type:: int

property representation¶

Gets the representation of this MeasurementValueObject. # noqa: E501

Returns:: The representation of this MeasurementValueObject. # noqa: E501
Return type:: str

swagger_types = {'id': 'int', 'representation': 'str', 'type': 'str', 'unit': 'str', 'value': 'str'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

property type¶

Gets the type of this MeasurementValueObject. # noqa: E501

Returns:: The type of this MeasurementValueObject. # noqa: E501
Return type:: str

property unit¶

Gets the unit of this MeasurementValueObject. # noqa: E501

Returns:: The unit of this MeasurementValueObject. # noqa: E501
Return type:: str

property value¶

Gets the value of this MeasurementValueObject. # noqa: E501

Returns:: The value of this MeasurementValueObject. # noqa: E501
Return type:: str

class gemmapy.sdk.models.OneOfSearchResultValueObjectObjectResultObject[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

OneOfSearchResultValueObjectObjectResultObject - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.OntologyTermValueObject(uri=None, name=None, parent_terms=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

OntologyTermValueObject - a model defined in Swagger

attribute_map = {'name': 'name', 'parent_terms': 'parentTerms', 'uri': 'uri'}¶

property name¶

Gets the name of this OntologyTermValueObject. # noqa: E501

Returns:: The name of this OntologyTermValueObject. # noqa: E501
Return type:: str

property parent_terms¶

Gets the parent_terms of this OntologyTermValueObject. # noqa: E501

Returns:: The parent_terms of this OntologyTermValueObject. # noqa: E501
Return type:: list[OntologyTermValueObject]

swagger_types = {'name': 'str', 'parent_terms': 'list[OntologyTermValueObject]', 'uri': 'str'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

property uri¶

Gets the uri of this OntologyTermValueObject. # noqa: E501

Returns:: The uri of this OntologyTermValueObject. # noqa: E501
Return type:: str

class gemmapy.sdk.models.PaginatedResponseDataObjectCompositeSequenceValueObject(data=None, group_by=None, sort=None, offset=None, limit=None, total_elements=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

PaginatedResponseDataObjectCompositeSequenceValueObject - a model defined in Swagger

attribute_map = {'data': 'data', 'group_by': 'groupBy', 'limit': 'limit', 'offset': 'offset', 'sort': 'sort', 'total_elements': 'totalElements'}¶

property data¶

Gets the data of this PaginatedResponseDataObjectCompositeSequenceValueObject. # noqa: E501

Returns:: The data of this PaginatedResponseDataObjectCompositeSequenceValueObject. # noqa: E501
Return type:: list[CompositeSequenceValueObject]

property group_by¶

Gets the group_by of this PaginatedResponseDataObjectCompositeSequenceValueObject. # noqa: E501

Returns:: The group_by of this PaginatedResponseDataObjectCompositeSequenceValueObject. # noqa: E501
Return type:: list[str]

property limit¶

Gets the limit of this PaginatedResponseDataObjectCompositeSequenceValueObject. # noqa: E501

Returns:: The limit of this PaginatedResponseDataObjectCompositeSequenceValueObject. # noqa: E501
Return type:: int

property offset¶

Gets the offset of this PaginatedResponseDataObjectCompositeSequenceValueObject. # noqa: E501

Returns:: The offset of this PaginatedResponseDataObjectCompositeSequenceValueObject. # noqa: E501
Return type:: int

property sort¶

Gets the sort of this PaginatedResponseDataObjectCompositeSequenceValueObject. # noqa: E501

Returns:: The sort of this PaginatedResponseDataObjectCompositeSequenceValueObject. # noqa: E501
Return type:: SortValueObject

swagger_types = {'data': 'list[CompositeSequenceValueObject]', 'group_by': 'list[str]', 'limit': 'int', 'offset': 'int', 'sort': 'SortValueObject', 'total_elements': 'int'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

property total_elements¶

Gets the total_elements of this PaginatedResponseDataObjectCompositeSequenceValueObject. # noqa: E501

Returns:: The total_elements of this PaginatedResponseDataObjectCompositeSequenceValueObject. # noqa: E501
Return type:: int

class gemmapy.sdk.models.PaginatedResponseDataObjectExpressionExperimentValueObject(data=None, group_by=None, sort=None, offset=None, limit=None, total_elements=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

PaginatedResponseDataObjectExpressionExperimentValueObject - a model defined in Swagger

attribute_map = {'data': 'data', 'group_by': 'groupBy', 'limit': 'limit', 'offset': 'offset', 'sort': 'sort', 'total_elements': 'totalElements'}¶

property data¶

Gets the data of this PaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501

Returns:: The data of this PaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501
Return type:: list[ExpressionExperimentValueObject]

property group_by¶

Gets the group_by of this PaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501

Returns:: The group_by of this PaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501
Return type:: list[str]

property limit¶

Gets the limit of this PaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501

Returns:: The limit of this PaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501
Return type:: int

property offset¶

Gets the offset of this PaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501

Returns:: The offset of this PaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501
Return type:: int

property sort¶

Gets the sort of this PaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501

Returns:: The sort of this PaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501
Return type:: SortValueObject

swagger_types = {'data': 'list[ExpressionExperimentValueObject]', 'group_by': 'list[str]', 'limit': 'int', 'offset': 'int', 'sort': 'SortValueObject', 'total_elements': 'int'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

property total_elements¶

Gets the total_elements of this PaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501

Returns:: The total_elements of this PaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501
Return type:: int

class gemmapy.sdk.models.PhysicalLocationValueObject(id=None, nucleotide=None, nucleotide_length=None, strand=None, bin=None, chromosome=None, taxon=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

PhysicalLocationValueObject - a model defined in Swagger

attribute_map = {'bin': 'bin', 'chromosome': 'chromosome', 'id': 'id', 'nucleotide': 'nucleotide', 'nucleotide_length': 'nucleotideLength', 'strand': 'strand', 'taxon': 'taxon'}¶

property bin¶

Gets the bin of this PhysicalLocationValueObject. # noqa: E501

Returns:: The bin of this PhysicalLocationValueObject. # noqa: E501
Return type:: int

property chromosome¶

Gets the chromosome of this PhysicalLocationValueObject. # noqa: E501

Returns:: The chromosome of this PhysicalLocationValueObject. # noqa: E501
Return type:: str

property id¶

Gets the id of this PhysicalLocationValueObject. # noqa: E501

Returns:: The id of this PhysicalLocationValueObject. # noqa: E501
Return type:: int

property nucleotide¶

Gets the nucleotide of this PhysicalLocationValueObject. # noqa: E501

Returns:: The nucleotide of this PhysicalLocationValueObject. # noqa: E501
Return type:: int

property nucleotide_length¶

Gets the nucleotide_length of this PhysicalLocationValueObject. # noqa: E501

Returns:: The nucleotide_length of this PhysicalLocationValueObject. # noqa: E501
Return type:: int

property strand¶

Gets the strand of this PhysicalLocationValueObject. # noqa: E501

Returns:: The strand of this PhysicalLocationValueObject. # noqa: E501
Return type:: str

swagger_types = {'bin': 'int', 'chromosome': 'str', 'id': 'int', 'nucleotide': 'int', 'nucleotide_length': 'int', 'strand': 'str', 'taxon': 'TaxonValueObject'}¶

property taxon¶

Gets the taxon of this PhysicalLocationValueObject. # noqa: E501

Returns:: The taxon of this PhysicalLocationValueObject. # noqa: E501
Return type:: TaxonValueObject

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.Platform[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

Platform - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.Platform1[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

Platform1 - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.Platform2[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

Platform2 - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.Platform3[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

Platform3 - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.Platform4[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

Platform4 - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.Platform5[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

Platform5 - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.PlatformArg[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

PlatformArg - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.Probe[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

Probe - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.QuantitationType[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

QuantitationType - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.QuantitationTypeArg[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

QuantitationTypeArg - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.QuantitationTypeValueObject(id=None, description=None, general_type=None, is_background=None, is_background_subtracted=None, is_batch_corrected=None, is_masked_preferred=None, is_normalized=None, is_preferred=None, is_ratio=None, is_recomputed_from_raw_data=None, name=None, representation=None, scale=None, type=None, vector_type=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

QuantitationTypeValueObject - a model defined in Swagger

attribute_map = {'description': 'description', 'general_type': 'generalType', 'id': 'id', 'is_background': 'isBackground', 'is_background_subtracted': 'isBackgroundSubtracted', 'is_batch_corrected': 'isBatchCorrected', 'is_masked_preferred': 'isMaskedPreferred', 'is_normalized': 'isNormalized', 'is_preferred': 'isPreferred', 'is_ratio': 'isRatio', 'is_recomputed_from_raw_data': 'isRecomputedFromRawData', 'name': 'name', 'representation': 'representation', 'scale': 'scale', 'type': 'type', 'vector_type': 'vectorType'}¶

property description¶

Gets the description of this QuantitationTypeValueObject. # noqa: E501

Returns:: The description of this QuantitationTypeValueObject. # noqa: E501
Return type:: str

property general_type¶

Gets the general_type of this QuantitationTypeValueObject. # noqa: E501

Returns:: The general_type of this QuantitationTypeValueObject. # noqa: E501
Return type:: str

property id¶

Gets the id of this QuantitationTypeValueObject. # noqa: E501

Returns:: The id of this QuantitationTypeValueObject. # noqa: E501
Return type:: int

property is_background¶

Gets the is_background of this QuantitationTypeValueObject. # noqa: E501

Returns:: The is_background of this QuantitationTypeValueObject. # noqa: E501
Return type:: bool

property is_background_subtracted¶

Gets the is_background_subtracted of this QuantitationTypeValueObject. # noqa: E501

Returns:: The is_background_subtracted of this QuantitationTypeValueObject. # noqa: E501
Return type:: bool

property is_batch_corrected¶

Gets the is_batch_corrected of this QuantitationTypeValueObject. # noqa: E501

Returns:: The is_batch_corrected of this QuantitationTypeValueObject. # noqa: E501
Return type:: bool

property is_masked_preferred¶

Gets the is_masked_preferred of this QuantitationTypeValueObject. # noqa: E501

Returns:: The is_masked_preferred of this QuantitationTypeValueObject. # noqa: E501
Return type:: bool

property is_normalized¶

Gets the is_normalized of this QuantitationTypeValueObject. # noqa: E501

Returns:: The is_normalized of this QuantitationTypeValueObject. # noqa: E501
Return type:: bool

property is_preferred¶

Gets the is_preferred of this QuantitationTypeValueObject. # noqa: E501

Returns:: The is_preferred of this QuantitationTypeValueObject. # noqa: E501
Return type:: bool

property is_ratio¶

Gets the is_ratio of this QuantitationTypeValueObject. # noqa: E501

Returns:: The is_ratio of this QuantitationTypeValueObject. # noqa: E501
Return type:: bool

property is_recomputed_from_raw_data¶

Gets the is_recomputed_from_raw_data of this QuantitationTypeValueObject. # noqa: E501

Returns:: The is_recomputed_from_raw_data of this QuantitationTypeValueObject. # noqa: E501
Return type:: bool

property name¶

Gets the name of this QuantitationTypeValueObject. # noqa: E501

Returns:: The name of this QuantitationTypeValueObject. # noqa: E501
Return type:: str

property representation¶

Gets the representation of this QuantitationTypeValueObject. # noqa: E501

Returns:: The representation of this QuantitationTypeValueObject. # noqa: E501
Return type:: str

property scale¶

Gets the scale of this QuantitationTypeValueObject. # noqa: E501

Returns:: The scale of this QuantitationTypeValueObject. # noqa: E501
Return type:: str

swagger_types = {'description': 'str', 'general_type': 'str', 'id': 'int', 'is_background': 'bool', 'is_background_subtracted': 'bool', 'is_batch_corrected': 'bool', 'is_masked_preferred': 'bool', 'is_normalized': 'bool', 'is_preferred': 'bool', 'is_ratio': 'bool', 'is_recomputed_from_raw_data': 'bool', 'name': 'str', 'representation': 'str', 'scale': 'str', 'type': 'str', 'vector_type': 'str'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

property type¶

Gets the type of this QuantitationTypeValueObject. # noqa: E501

Returns:: The type of this QuantitationTypeValueObject. # noqa: E501
Return type:: str

property vector_type¶

Gets the vector_type of this QuantitationTypeValueObject. # noqa: E501

Returns:: The vector_type of this QuantitationTypeValueObject. # noqa: E501
Return type:: str

class gemmapy.sdk.models.QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject(data=None, query=None, filter=None, group_by=None, sort=None, offset=None, limit=None, total_elements=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject - a model defined in Swagger

attribute_map = {'data': 'data', 'filter': 'filter', 'group_by': 'groupBy', 'limit': 'limit', 'offset': 'offset', 'query': 'query', 'sort': 'sort', 'total_elements': 'totalElements'}¶

property data¶

Gets the data of this QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501

Returns:: The data of this QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501
Return type:: list[ExpressionExperimentValueObject]

property filter¶

Gets the filter of this QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501

Returns:: The filter of this QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501
Return type:: str

property group_by¶

Gets the group_by of this QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501

Returns:: The group_by of this QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501
Return type:: list[str]

property limit¶

Gets the limit of this QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501

Returns:: The limit of this QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501
Return type:: int

property offset¶

Gets the offset of this QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501

Returns:: The offset of this QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501
Return type:: int

property query¶

Gets the query of this QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501

Returns:: The query of this QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501
Return type:: str

property sort¶

Gets the sort of this QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501

Returns:: The sort of this QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501
Return type:: SortValueObject

swagger_types = {'data': 'list[ExpressionExperimentValueObject]', 'filter': 'str', 'group_by': 'list[str]', 'limit': 'int', 'offset': 'int', 'query': 'str', 'sort': 'SortValueObject', 'total_elements': 'int'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

property total_elements¶

Gets the total_elements of this QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501

Returns:: The total_elements of this QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentValueObject. # noqa: E501
Return type:: int

class gemmapy.sdk.models.QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentWithSearchResultValueObject(data=None, query=None, filter=None, group_by=None, sort=None, offset=None, limit=None, total_elements=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentWithSearchResultValueObject - a model defined in Swagger

attribute_map = {'data': 'data', 'filter': 'filter', 'group_by': 'groupBy', 'limit': 'limit', 'offset': 'offset', 'query': 'query', 'sort': 'sort', 'total_elements': 'totalElements'}¶

property data¶

Gets the data of this QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The data of this QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: list[ExpressionExperimentWithSearchResultValueObject]

property filter¶

Gets the filter of this QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The filter of this QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: str

property group_by¶

Gets the group_by of this QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The group_by of this QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: list[str]

property limit¶

Gets the limit of this QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The limit of this QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: int

property offset¶

Gets the offset of this QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The offset of this QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: int

property query¶

Gets the query of this QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The query of this QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: str

property sort¶

Gets the sort of this QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The sort of this QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: SortValueObject

swagger_types = {'data': 'list[ExpressionExperimentWithSearchResultValueObject]', 'filter': 'str', 'group_by': 'list[str]', 'limit': 'int', 'offset': 'int', 'query': 'str', 'sort': 'SortValueObject', 'total_elements': 'int'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

property total_elements¶

Gets the total_elements of this QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentWithSearchResultValueObject. # noqa: E501

Returns:: The total_elements of this QueriedAndFilteredAndPaginatedResponseDataObjectExpressionExperimentWithSearchResultValueObject. # noqa: E501
Return type:: int

class gemmapy.sdk.models.QueriedAndFilteredResponseDataObjectCategoryWithUsageStatisticsValueObject(data=None, query=None, filter=None, group_by=None, sort=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

QueriedAndFilteredResponseDataObjectCategoryWithUsageStatisticsValueObject - a model defined in Swagger

attribute_map = {'data': 'data', 'filter': 'filter', 'group_by': 'groupBy', 'query': 'query', 'sort': 'sort'}¶

property data¶

Gets the data of this QueriedAndFilteredResponseDataObjectCategoryWithUsageStatisticsValueObject. # noqa: E501

Returns:: The data of this QueriedAndFilteredResponseDataObjectCategoryWithUsageStatisticsValueObject. # noqa: E501
Return type:: list[CategoryWithUsageStatisticsValueObject]

property filter¶

Gets the filter of this QueriedAndFilteredResponseDataObjectCategoryWithUsageStatisticsValueObject. # noqa: E501

Returns:: The filter of this QueriedAndFilteredResponseDataObjectCategoryWithUsageStatisticsValueObject. # noqa: E501
Return type:: str

property group_by¶

Gets the group_by of this QueriedAndFilteredResponseDataObjectCategoryWithUsageStatisticsValueObject. # noqa: E501

Returns:: The group_by of this QueriedAndFilteredResponseDataObjectCategoryWithUsageStatisticsValueObject. # noqa: E501
Return type:: list[str]

property query¶

Gets the query of this QueriedAndFilteredResponseDataObjectCategoryWithUsageStatisticsValueObject. # noqa: E501

Returns:: The query of this QueriedAndFilteredResponseDataObjectCategoryWithUsageStatisticsValueObject. # noqa: E501
Return type:: str

property sort¶

Gets the sort of this QueriedAndFilteredResponseDataObjectCategoryWithUsageStatisticsValueObject. # noqa: E501

Returns:: The sort of this QueriedAndFilteredResponseDataObjectCategoryWithUsageStatisticsValueObject. # noqa: E501
Return type:: str

swagger_types = {'data': 'list[CategoryWithUsageStatisticsValueObject]', 'filter': 'str', 'group_by': 'list[str]', 'query': 'str', 'sort': 'str'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.QueriedAndFilteredResponseDataObjectTaxonWithUsageStatisticsValueObject(data=None, query=None, filter=None, group_by=None, sort=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

QueriedAndFilteredResponseDataObjectTaxonWithUsageStatisticsValueObject - a model defined in Swagger

attribute_map = {'data': 'data', 'filter': 'filter', 'group_by': 'groupBy', 'query': 'query', 'sort': 'sort'}¶

property data¶

Gets the data of this QueriedAndFilteredResponseDataObjectTaxonWithUsageStatisticsValueObject. # noqa: E501

Returns:: The data of this QueriedAndFilteredResponseDataObjectTaxonWithUsageStatisticsValueObject. # noqa: E501
Return type:: list[TaxonWithUsageStatisticsValueObject]

property filter¶

Gets the filter of this QueriedAndFilteredResponseDataObjectTaxonWithUsageStatisticsValueObject. # noqa: E501

Returns:: The filter of this QueriedAndFilteredResponseDataObjectTaxonWithUsageStatisticsValueObject. # noqa: E501
Return type:: str

property group_by¶

Gets the group_by of this QueriedAndFilteredResponseDataObjectTaxonWithUsageStatisticsValueObject. # noqa: E501

Returns:: The group_by of this QueriedAndFilteredResponseDataObjectTaxonWithUsageStatisticsValueObject. # noqa: E501
Return type:: list[str]

property query¶

Gets the query of this QueriedAndFilteredResponseDataObjectTaxonWithUsageStatisticsValueObject. # noqa: E501

Returns:: The query of this QueriedAndFilteredResponseDataObjectTaxonWithUsageStatisticsValueObject. # noqa: E501
Return type:: str

property sort¶

Gets the sort of this QueriedAndFilteredResponseDataObjectTaxonWithUsageStatisticsValueObject. # noqa: E501

Returns:: The sort of this QueriedAndFilteredResponseDataObjectTaxonWithUsageStatisticsValueObject. # noqa: E501
Return type:: str

swagger_types = {'data': 'list[TaxonWithUsageStatisticsValueObject]', 'filter': 'str', 'group_by': 'list[str]', 'query': 'str', 'sort': 'str'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.QueryArg[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

QueryArg - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.ResponseDataObjectApiInfoValueObject(data=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

ResponseDataObjectApiInfoValueObject - a model defined in Swagger

attribute_map = {'data': 'data'}¶

property data¶

Gets the data of this ResponseDataObjectApiInfoValueObject. # noqa: E501

Returns:: The data of this ResponseDataObjectApiInfoValueObject. # noqa: E501
Return type:: ApiInfoValueObject

swagger_types = {'data': 'ApiInfoValueObject'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.ResponseDataObjectDifferentialExpressionAnalysisResultSetValueObject(data=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

ResponseDataObjectDifferentialExpressionAnalysisResultSetValueObject - a model defined in Swagger

attribute_map = {'data': 'data'}¶

property data¶

Gets the data of this ResponseDataObjectDifferentialExpressionAnalysisResultSetValueObject. # noqa: E501

Returns:: The data of this ResponseDataObjectDifferentialExpressionAnalysisResultSetValueObject. # noqa: E501
Return type:: DifferentialExpressionAnalysisResultSetValueObject

swagger_types = {'data': 'DifferentialExpressionAnalysisResultSetValueObject'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.ResponseDataObjectListAnnotationSearchResultValueObject(data=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

ResponseDataObjectListAnnotationSearchResultValueObject - a model defined in Swagger

attribute_map = {'data': 'data'}¶

property data¶

Gets the data of this ResponseDataObjectListAnnotationSearchResultValueObject. # noqa: E501

Returns:: The data of this ResponseDataObjectListAnnotationSearchResultValueObject. # noqa: E501
Return type:: list[AnnotationSearchResultValueObject]

swagger_types = {'data': 'list[AnnotationSearchResultValueObject]'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.ResponseDataObjectListArrayDesignValueObject(data=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

ResponseDataObjectListArrayDesignValueObject - a model defined in Swagger

attribute_map = {'data': 'data'}¶

property data¶

Gets the data of this ResponseDataObjectListArrayDesignValueObject. # noqa: E501

Returns:: The data of this ResponseDataObjectListArrayDesignValueObject. # noqa: E501
Return type:: list[ArrayDesignValueObject]

swagger_types = {'data': 'list[ArrayDesignValueObject]'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.ResponseDataObjectListBioAssayValueObject(data=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

ResponseDataObjectListBioAssayValueObject - a model defined in Swagger

attribute_map = {'data': 'data'}¶

property data¶

Gets the data of this ResponseDataObjectListBioAssayValueObject. # noqa: E501

Returns:: The data of this ResponseDataObjectListBioAssayValueObject. # noqa: E501
Return type:: list[BioAssayValueObject]

swagger_types = {'data': 'list[BioAssayValueObject]'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.ResponseDataObjectListDifferentialExpressionAnalysisValueObject(data=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

ResponseDataObjectListDifferentialExpressionAnalysisValueObject - a model defined in Swagger

attribute_map = {'data': 'data'}¶

property data¶

Gets the data of this ResponseDataObjectListDifferentialExpressionAnalysisValueObject. # noqa: E501

Returns:: The data of this ResponseDataObjectListDifferentialExpressionAnalysisValueObject. # noqa: E501
Return type:: list[DifferentialExpressionAnalysisValueObject]

swagger_types = {'data': 'list[DifferentialExpressionAnalysisValueObject]'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.ResponseDataObjectListExperimentExpressionLevelsValueObject(data=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

ResponseDataObjectListExperimentExpressionLevelsValueObject - a model defined in Swagger

attribute_map = {'data': 'data'}¶

property data¶

Gets the data of this ResponseDataObjectListExperimentExpressionLevelsValueObject. # noqa: E501

Returns:: The data of this ResponseDataObjectListExperimentExpressionLevelsValueObject. # noqa: E501
Return type:: list[ExperimentExpressionLevelsValueObject]

swagger_types = {'data': 'list[ExperimentExpressionLevelsValueObject]'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.ResponseDataObjectListGeneOntologyTermValueObject(data=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

ResponseDataObjectListGeneOntologyTermValueObject - a model defined in Swagger

attribute_map = {'data': 'data'}¶

property data¶

Gets the data of this ResponseDataObjectListGeneOntologyTermValueObject. # noqa: E501

Returns:: The data of this ResponseDataObjectListGeneOntologyTermValueObject. # noqa: E501
Return type:: list[GeneOntologyTermValueObject]

swagger_types = {'data': 'list[GeneOntologyTermValueObject]'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.ResponseDataObjectListGeneValueObject(data=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

ResponseDataObjectListGeneValueObject - a model defined in Swagger

attribute_map = {'data': 'data'}¶

property data¶

Gets the data of this ResponseDataObjectListGeneValueObject. # noqa: E501

Returns:: The data of this ResponseDataObjectListGeneValueObject. # noqa: E501
Return type:: list[GeneValueObject]

swagger_types = {'data': 'list[GeneValueObject]'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.ResponseDataObjectListPhysicalLocationValueObject(data=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

ResponseDataObjectListPhysicalLocationValueObject - a model defined in Swagger

attribute_map = {'data': 'data'}¶

property data¶

Gets the data of this ResponseDataObjectListPhysicalLocationValueObject. # noqa: E501

Returns:: The data of this ResponseDataObjectListPhysicalLocationValueObject. # noqa: E501
Return type:: list[PhysicalLocationValueObject]

swagger_types = {'data': 'list[PhysicalLocationValueObject]'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.ResponseDataObjectListTaxonValueObject(data=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

ResponseDataObjectListTaxonValueObject - a model defined in Swagger

attribute_map = {'data': 'data'}¶

property data¶

Gets the data of this ResponseDataObjectListTaxonValueObject. # noqa: E501

Returns:: The data of this ResponseDataObjectListTaxonValueObject. # noqa: E501
Return type:: list[TaxonValueObject]

swagger_types = {'data': 'list[TaxonValueObject]'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.ResponseDataObjectLong(data=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

ResponseDataObjectLong - a model defined in Swagger

attribute_map = {'data': 'data'}¶

property data¶

Gets the data of this ResponseDataObjectLong. # noqa: E501

Returns:: The data of this ResponseDataObjectLong. # noqa: E501
Return type:: int

swagger_types = {'data': 'int'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.ResponseDataObjectSetAnnotationValueObject(data=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

ResponseDataObjectSetAnnotationValueObject - a model defined in Swagger

attribute_map = {'data': 'data'}¶

property data¶

Gets the data of this ResponseDataObjectSetAnnotationValueObject. # noqa: E501

Returns:: The data of this ResponseDataObjectSetAnnotationValueObject. # noqa: E501
Return type:: list[AnnotationValueObject]

swagger_types = {'data': 'list[AnnotationValueObject]'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.ResponseDataObjectSetQuantitationTypeValueObject(data=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

ResponseDataObjectSetQuantitationTypeValueObject - a model defined in Swagger

attribute_map = {'data': 'data'}¶

property data¶

Gets the data of this ResponseDataObjectSetQuantitationTypeValueObject. # noqa: E501

Returns:: The data of this ResponseDataObjectSetQuantitationTypeValueObject. # noqa: E501
Return type:: list[QuantitationTypeValueObject]

swagger_types = {'data': 'list[QuantitationTypeValueObject]'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.ResponseDataObjectSimpleSVDValueObject(data=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

ResponseDataObjectSimpleSVDValueObject - a model defined in Swagger

attribute_map = {'data': 'data'}¶

property data¶

Gets the data of this ResponseDataObjectSimpleSVDValueObject. # noqa: E501

Returns:: The data of this ResponseDataObjectSimpleSVDValueObject. # noqa: E501
Return type:: SimpleSVDValueObject

swagger_types = {'data': 'SimpleSVDValueObject'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.ResponseErrorObject(error=None, api_version=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

ResponseErrorObject - a model defined in Swagger

property api_version¶

Gets the api_version of this ResponseErrorObject. # noqa: E501

Returns:: The api_version of this ResponseErrorObject. # noqa: E501
Return type:: str

attribute_map = {'api_version': 'apiVersion', 'error': 'error'}¶

property error¶

Gets the error of this ResponseErrorObject. # noqa: E501

Returns:: The error of this ResponseErrorObject. # noqa: E501
Return type:: WellComposedErrorBody

swagger_types = {'api_version': 'str', 'error': 'WellComposedErrorBody'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.SearchResultType[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

SearchResultType - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.SearchResultValueObjectExpressionExperimentValueObject(result_id=None, result_type=None, score=None, highlights=None, result_object=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

SearchResultValueObjectExpressionExperimentValueObject - a model defined in Swagger

attribute_map = {'highlights': 'highlights', 'result_id': 'resultId', 'result_object': 'resultObject', 'result_type': 'resultType', 'score': 'score'}¶

property highlights¶

Gets the highlights of this SearchResultValueObjectExpressionExperimentValueObject. # noqa: E501

Returns:: The highlights of this SearchResultValueObjectExpressionExperimentValueObject. # noqa: E501
Return type:: dict(str, str)

property result_id¶

Gets the result_id of this SearchResultValueObjectExpressionExperimentValueObject. # noqa: E501

Returns:: The result_id of this SearchResultValueObjectExpressionExperimentValueObject. # noqa: E501
Return type:: int

property result_object¶

Gets the result_object of this SearchResultValueObjectExpressionExperimentValueObject. # noqa: E501

Returns:: The result_object of this SearchResultValueObjectExpressionExperimentValueObject. # noqa: E501
Return type:: ExpressionExperimentValueObject

property result_type¶

Gets the result_type of this SearchResultValueObjectExpressionExperimentValueObject. # noqa: E501

Returns:: The result_type of this SearchResultValueObjectExpressionExperimentValueObject. # noqa: E501
Return type:: SearchResultType

property score¶

Gets the score of this SearchResultValueObjectExpressionExperimentValueObject. # noqa: E501

Returns:: The score of this SearchResultValueObjectExpressionExperimentValueObject. # noqa: E501
Return type:: float

swagger_types = {'highlights': 'dict(str, str)', 'result_id': 'int', 'result_object': 'ExpressionExperimentValueObject', 'result_type': 'SearchResultType', 'score': 'float'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.SearchResultValueObjectObject(result_id=None, result_type=None, score=None, highlights=None, result_object=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

SearchResultValueObjectObject - a model defined in Swagger

attribute_map = {'highlights': 'highlights', 'result_id': 'resultId', 'result_object': 'resultObject', 'result_type': 'resultType', 'score': 'score'}¶

property highlights¶

Gets the highlights of this SearchResultValueObjectObject. # noqa: E501

Returns:: The highlights of this SearchResultValueObjectObject. # noqa: E501
Return type:: dict(str, str)

property result_id¶

Gets the result_id of this SearchResultValueObjectObject. # noqa: E501

Returns:: The result_id of this SearchResultValueObjectObject. # noqa: E501
Return type:: int

property result_object¶

Gets the result_object of this SearchResultValueObjectObject. # noqa: E501

Returns:: The result_object of this SearchResultValueObjectObject. # noqa: E501
Return type:: OneOfSearchResultValueObjectObjectResultObject

property result_type¶

Gets the result_type of this SearchResultValueObjectObject. # noqa: E501

Returns:: The result_type of this SearchResultValueObjectObject. # noqa: E501
Return type:: SearchResultType

property score¶

Gets the score of this SearchResultValueObjectObject. # noqa: E501

Returns:: The score of this SearchResultValueObjectObject. # noqa: E501
Return type:: float

swagger_types = {'highlights': 'dict(str, str)', 'result_id': 'int', 'result_object': 'OneOfSearchResultValueObjectObjectResultObject', 'result_type': 'SearchResultType', 'score': 'float'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.SearchResultsResponseDataObject(data=None, search_settings=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

SearchResultsResponseDataObject - a model defined in Swagger

attribute_map = {'data': 'data', 'search_settings': 'searchSettings'}¶

property data¶

Gets the data of this SearchResultsResponseDataObject. # noqa: E501

Returns:: The data of this SearchResultsResponseDataObject. # noqa: E501
Return type:: list[SearchResultValueObjectObject]

property search_settings¶

Gets the search_settings of this SearchResultsResponseDataObject. # noqa: E501

Returns:: The search_settings of this SearchResultsResponseDataObject. # noqa: E501
Return type:: SearchSettingsValueObject

swagger_types = {'data': 'list[SearchResultValueObjectObject]', 'search_settings': 'SearchSettingsValueObject'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.SearchSettingsValueObject(query=None, result_types=None, taxon=None, platform=None, max_results=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

SearchSettingsValueObject - a model defined in Swagger

attribute_map = {'max_results': 'maxResults', 'platform': 'platform', 'query': 'query', 'result_types': 'resultTypes', 'taxon': 'taxon'}¶

property max_results¶

Gets the max_results of this SearchSettingsValueObject. # noqa: E501

Returns:: The max_results of this SearchSettingsValueObject. # noqa: E501
Return type:: int

property platform¶

Gets the platform of this SearchSettingsValueObject. # noqa: E501

Returns:: The platform of this SearchSettingsValueObject. # noqa: E501
Return type:: ArrayDesignValueObject

property query¶

Gets the query of this SearchSettingsValueObject. # noqa: E501

Returns:: The query of this SearchSettingsValueObject. # noqa: E501
Return type:: str

property result_types¶

Gets the result_types of this SearchSettingsValueObject. # noqa: E501

Returns:: The result_types of this SearchSettingsValueObject. # noqa: E501
Return type:: list[SearchResultType]

swagger_types = {'max_results': 'int', 'platform': 'ArrayDesignValueObject', 'query': 'str', 'result_types': 'list[SearchResultType]', 'taxon': 'TaxonValueObject'}¶

property taxon¶

Gets the taxon of this SearchSettingsValueObject. # noqa: E501

Returns:: The taxon of this SearchSettingsValueObject. # noqa: E501
Return type:: TaxonValueObject

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.SimpleSVDValueObject(bio_material_ids=None, variances=None, vmatrix=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

SimpleSVDValueObject - a model defined in Swagger

attribute_map = {'bio_material_ids': 'bioMaterialIds', 'variances': 'variances', 'vmatrix': 'vmatrix'}¶

property bio_material_ids¶

Gets the bio_material_ids of this SimpleSVDValueObject. # noqa: E501

Returns:: The bio_material_ids of this SimpleSVDValueObject. # noqa: E501
Return type:: list[int]

swagger_types = {'bio_material_ids': 'list[int]', 'variances': 'list[float]', 'vmatrix': 'list[list[float]]'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

property variances¶

Gets the variances of this SimpleSVDValueObject. # noqa: E501

Returns:: The variances of this SimpleSVDValueObject. # noqa: E501
Return type:: list[float]

property vmatrix¶

Gets the vmatrix of this SimpleSVDValueObject. # noqa: E501

Returns:: The vmatrix of this SimpleSVDValueObject. # noqa: E501
Return type:: list[list[float]]

class gemmapy.sdk.models.SortArgArrayDesign[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

SortArgArrayDesign - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.SortArgExpressionAnalysisResultSet[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

SortArgExpressionAnalysisResultSet - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.SortArgExpressionExperiment[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

SortArgExpressionExperiment - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.SortArgTaxon[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

SortArgTaxon - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.SortValueObject(order_by=None, direction=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

SortValueObject - a model defined in Swagger

attribute_map = {'direction': 'direction', 'order_by': 'orderBy'}¶

property direction¶

Gets the direction of this SortValueObject. # noqa: E501

Returns:: The direction of this SortValueObject. # noqa: E501
Return type:: str

property order_by¶

Gets the order_by of this SortValueObject. # noqa: E501

Returns:: The order_by of this SortValueObject. # noqa: E501
Return type:: str

swagger_types = {'direction': 'str', 'order_by': 'str'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.StatementValueObject(category=None, category_uri=None, subject=None, subject_uri=None, predicate=None, predicate_uri=None, object=None, object_uri=None, subject_id=None, object_id=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

StatementValueObject - a model defined in Swagger

attribute_map = {'category': 'category', 'category_uri': 'categoryUri', 'object': 'object', 'object_id': 'objectId', 'object_uri': 'objectUri', 'predicate': 'predicate', 'predicate_uri': 'predicateUri', 'subject': 'subject', 'subject_id': 'subjectId', 'subject_uri': 'subjectUri'}¶

property category¶

Gets the category of this StatementValueObject. # noqa: E501

Returns:: The category of this StatementValueObject. # noqa: E501
Return type:: str

property category_uri¶

Gets the category_uri of this StatementValueObject. # noqa: E501

Returns:: The category_uri of this StatementValueObject. # noqa: E501
Return type:: str

property object¶

Gets the object of this StatementValueObject. # noqa: E501

Returns:: The object of this StatementValueObject. # noqa: E501
Return type:: str

property object_id¶

Gets the object_id of this StatementValueObject. # noqa: E501

Returns:: The object_id of this StatementValueObject. # noqa: E501
Return type:: str

property object_uri¶

Gets the object_uri of this StatementValueObject. # noqa: E501

Returns:: The object_uri of this StatementValueObject. # noqa: E501
Return type:: str

property predicate¶

Gets the predicate of this StatementValueObject. # noqa: E501

Returns:: The predicate of this StatementValueObject. # noqa: E501
Return type:: str

property predicate_uri¶

Gets the predicate_uri of this StatementValueObject. # noqa: E501

Returns:: The predicate_uri of this StatementValueObject. # noqa: E501
Return type:: str

property subject¶

Gets the subject of this StatementValueObject. # noqa: E501

Returns:: The subject of this StatementValueObject. # noqa: E501
Return type:: str

property subject_id¶

Gets the subject_id of this StatementValueObject. # noqa: E501

Returns:: The subject_id of this StatementValueObject. # noqa: E501
Return type:: str

property subject_uri¶

Gets the subject_uri of this StatementValueObject. # noqa: E501

Returns:: The subject_uri of this StatementValueObject. # noqa: E501
Return type:: str

swagger_types = {'category': 'str', 'category_uri': 'str', 'object': 'str', 'object_id': 'str', 'object_uri': 'str', 'predicate': 'str', 'predicate_uri': 'str', 'subject': 'str', 'subject_id': 'str', 'subject_uri': 'str'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.Taxon[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

Taxon - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.Taxon1[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

Taxon1 - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.Taxon2[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

Taxon2 - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.Taxon3[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

Taxon3 - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.Taxon4[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

Taxon4 - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.Taxon5[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

Taxon5 - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.Taxon6[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

Taxon6 - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.TaxonArg[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

TaxonArg - a model defined in Swagger

attribute_map = {}¶

swagger_types = {}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.TaxonValueObject(id=None, scientific_name=None, common_name=None, ncbi_id=None, external_database=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

TaxonValueObject - a model defined in Swagger

attribute_map = {'common_name': 'commonName', 'external_database': 'externalDatabase', 'id': 'id', 'ncbi_id': 'ncbiId', 'scientific_name': 'scientificName'}¶

property common_name¶

Gets the common_name of this TaxonValueObject. # noqa: E501

Returns:: The common_name of this TaxonValueObject. # noqa: E501
Return type:: str

property external_database¶

Gets the external_database of this TaxonValueObject. # noqa: E501

Returns:: The external_database of this TaxonValueObject. # noqa: E501
Return type:: ExternalDatabaseValueObject

property id¶

Gets the id of this TaxonValueObject. # noqa: E501

Returns:: The id of this TaxonValueObject. # noqa: E501
Return type:: int

property ncbi_id¶

Gets the ncbi_id of this TaxonValueObject. # noqa: E501

Returns:: The ncbi_id of this TaxonValueObject. # noqa: E501
Return type:: int

property scientific_name¶

Gets the scientific_name of this TaxonValueObject. # noqa: E501

Returns:: The scientific_name of this TaxonValueObject. # noqa: E501
Return type:: str

swagger_types = {'common_name': 'str', 'external_database': 'ExternalDatabaseValueObject', 'id': 'int', 'ncbi_id': 'int', 'scientific_name': 'str'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.TaxonWithUsageStatisticsValueObject(id=None, scientific_name=None, common_name=None, ncbi_id=None, external_database=None, number_of_expression_experiments=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

TaxonWithUsageStatisticsValueObject - a model defined in Swagger

attribute_map = {'common_name': 'commonName', 'external_database': 'externalDatabase', 'id': 'id', 'ncbi_id': 'ncbiId', 'number_of_expression_experiments': 'numberOfExpressionExperiments', 'scientific_name': 'scientificName'}¶

property common_name¶

Gets the common_name of this TaxonWithUsageStatisticsValueObject. # noqa: E501

Returns:: The common_name of this TaxonWithUsageStatisticsValueObject. # noqa: E501
Return type:: str

property external_database¶

Gets the external_database of this TaxonWithUsageStatisticsValueObject. # noqa: E501

Returns:: The external_database of this TaxonWithUsageStatisticsValueObject. # noqa: E501
Return type:: ExternalDatabaseValueObject

property id¶

Gets the id of this TaxonWithUsageStatisticsValueObject. # noqa: E501

Returns:: The id of this TaxonWithUsageStatisticsValueObject. # noqa: E501
Return type:: int

property ncbi_id¶

Gets the ncbi_id of this TaxonWithUsageStatisticsValueObject. # noqa: E501

Returns:: The ncbi_id of this TaxonWithUsageStatisticsValueObject. # noqa: E501
Return type:: int

property number_of_expression_experiments¶

Gets the number_of_expression_experiments of this TaxonWithUsageStatisticsValueObject. # noqa: E501

Returns:: The number_of_expression_experiments of this TaxonWithUsageStatisticsValueObject. # noqa: E501
Return type:: int

property scientific_name¶

Gets the scientific_name of this TaxonWithUsageStatisticsValueObject. # noqa: E501

Returns:: The scientific_name of this TaxonWithUsageStatisticsValueObject. # noqa: E501
Return type:: str

swagger_types = {'common_name': 'str', 'external_database': 'ExternalDatabaseValueObject', 'id': 'int', 'ncbi_id': 'int', 'number_of_expression_experiments': 'int', 'scientific_name': 'str'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.VectorElementValueObject(design_element_name=None, bio_assay_expression_levels=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

VectorElementValueObject - a model defined in Swagger

attribute_map = {'bio_assay_expression_levels': 'bioAssayExpressionLevels', 'design_element_name': 'designElementName'}¶

property bio_assay_expression_levels¶

Gets the bio_assay_expression_levels of this VectorElementValueObject. # noqa: E501

Returns:: The bio_assay_expression_levels of this VectorElementValueObject. # noqa: E501
Return type:: dict(str, float)

property design_element_name¶

Gets the design_element_name of this VectorElementValueObject. # noqa: E501

Returns:: The design_element_name of this VectorElementValueObject. # noqa: E501
Return type:: str

swagger_types = {'bio_assay_expression_levels': 'dict(str, float)', 'design_element_name': 'str'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

class gemmapy.sdk.models.WellComposedErrorBody(code=None, message=None, errors=None)[source]¶

NOTE: This class is auto generated by the swagger code generator program.

Do not edit the class manually.

WellComposedErrorBody - a model defined in Swagger

attribute_map = {'code': 'code', 'errors': 'errors', 'message': 'message'}¶

property code¶

Gets the code of this WellComposedErrorBody. # noqa: E501

Returns:: The code of this WellComposedErrorBody. # noqa: E501
Return type:: int

property errors¶

Gets the errors of this WellComposedErrorBody. # noqa: E501

Returns:: The errors of this WellComposedErrorBody. # noqa: E501
Return type:: dict(str, str)

property message¶

Gets the message of this WellComposedErrorBody. # noqa: E501

Returns:: The message of this WellComposedErrorBody. # noqa: E501
Return type:: str

swagger_types = {'code': 'int', 'errors': 'dict(str, str)', 'message': 'str'}¶

to_dict()[source]¶: Returns the model properties as a dict

to_str()[source]¶: Returns the string representation of the model

API Reference¶

gemmapy Package¶

gemmapy.GemmaPy Class¶

gemmapy.sdk.models Subpackage¶

GemmaPy

Navigation

Related Topics